DRSC/TRiP Functional Genomics Resources

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Protein Alignment Shal and kcna6a

DIOPT Version :10

Sequence 1:NP_001097646.1 Gene:Shal / 40129 FlyBaseID:FBgn0005564 Length:571 Species:Drosophila melanogaster
Sequence 2:NP_001124098.1 Gene:kcna6a / 795490 ZFINID:ZDB-GENE-080722-21 Length:475 Species:Danio rerio


Alignment Length:429 Identity:160/429 - (37%)
Similarity:238/429 - (55%) Gaps:55/429 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly    41 EKLLINVSGRRFETWRNTLEKYPDTLLGSN-EREFFYDEDCKEYFFDRDPDIFRHILNYYRT-GK 103
            |.:.||:||.||||...||.:||:||||.. :|..|:|....|:||||:...|..||.||:: |:
Zfish    31 ELVTINISGLRFETQLKTLARYPNTLLGDPIKRMRFFDPLRNEFFFDRNRPSFDAILYYYQSGGR 95

  Fly   104 LHYPKHECLTSYDEELAFFGIMPDVIGDCCYEDYRDRKRENAERLMDDKLSENGDQNLQQLTNMR 168
            |..|.:..:..:.:|:.|:.|..|||                :...:|:.....|:........:
Zfish    96 LRRPINVPVDMFLDEIKFYEIGDDVI----------------KHFQEDEGLLKEDERPLPSNEFK 144

  Fly   169 QKMWRAFENPHTSTSALVFYYVTGFFIAVSVMANVVETVP---------CGHRPGRAGT-LPCGE 223
            :::|..||:|.:|.:|.:...|:...|.:|::...:||:|         ..|.|..:.| :....
Zfish   145 RQIWLLFEHPDSSGAARIIAIVSVMVILISIIIFCIETLPEFREDDRVFDNHLPANSTTSVQRLS 209

  Fly   224 RYKIVFFCLDTACVMIFTAEYLLRLFAAPDRCKFVRSVMSIIDVVAIMPYYIGLG-----ITDND 283
            .|...||.|:|.|::.|..|..:|..|.|.:..|.:.:|:.||:||||||:|.|.     :..|.
Zfish   210 AYTDPFFLLETICIVWFCFELFIRFLACPSKPTFFKDIMNTIDIVAIMPYFITLSLELGEVQSNQ 274

  Fly   284 DVSGAFVTLRVF---RVFRIFKFSRHSQGLRILGYTLKSCASELGFLVFSLAMAIIIFATVMFYA 345
            ..:.:...|||.   |||||||.||||:||:|||.||::...|||.|:|.|.:.||:|::.:::|
Zfish   275 QQTTSLAILRVIRLVRVFRIFKLSRHSKGLQILGQTLRASMRELGLLIFFLIIGIILFSSAVYFA 339

  Fly   346 EKNVNGTNFTSIPAAFWYTIVTMTTLGYGDMVPETIAGKIVGGVCSLSGVLVIALPVPVIVSNFS 410
            |.:...|:|||||.|||:.:|:|||:|||||.|.||.|||||.:|:::|||.||||||||||||:
Zfish   340 EADDPETSFTSIPDAFWWAVVSMTTVGYGDMYPVTIGGKIVGSMCAIAGVLTIALPVPVIVSNFN 404

  Fly   411 RIYHQN-------------------QRADKRKAQRKARL 430
            ..||:.                   .:.|:.|:..|:.|
Zfish   405 YFYHREHNEADQVEYTHVTCGRSLPMQCDRNKSDSKSSL 443

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ShalNP_001097646.1 BTB_POZ_Shal-like 6..144 CDD:349727 39/104 (38%)
Ion_trans 188..415 CDD:459842 108/244 (44%)
DUF3399 471..535 CDD:463381
kcna6aNP_001124098.1 BTB_POZ 31..157 CDD:453885 45/141 (32%)
Ion_trans 203..411 CDD:459842 101/207 (49%)
Blue background indicates that the domain is not in the aligned region.

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