DRSC/TRiP Functional Genomics Resources

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Protein Alignment Shal and kcnc3b

DIOPT Version :10

Sequence 1:NP_001097646.1 Gene:Shal / 40129 FlyBaseID:FBgn0005564 Length:571 Species:Drosophila melanogaster
Sequence 2:XP_021325878.1 Gene:kcnc3b / 564371 ZFINID:ZDB-GENE-100901-2 Length:658 Species:Danio rerio


Alignment Length:606 Identity:194/606 - (32%)
Similarity:291/606 - (48%) Gaps:126/606 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly    38 TDDEKLLINVSGRRFETWRNTLEKYPDTLLG--------SNEREFFYDEDCKEYFFDRDPDIFRH 94
            ::.||::||..|.|.||:|:||:..|.|.|.        ||   |.||....|:||||.|.:|..
Zfish    33 SESEKIVINCGGVRHETYRSTLKTLPGTRLSWLTEPDAFSN---FDYDPKSDEFFFDRHPSVFSF 94

  Fly    95 ILNYYRTGKLHYPKHECLTSYDEELAFFGIMPDVIGDCCYEDYRDRKRENAERLM---------- 149
            |||||||||||.|...|...::|||||:||....:..||:.:||..:  :||..:          
Zfish    95 ILNYYRTGKLHCPNDVCGPLFEEELAFWGIDETDVEACCWMNYRQHR--DAEEALDSFETPEPEV 157

  Fly   150 -DDKLSENGDQNLQQLTNM------------RQKMWRAFENPHTSTSALVFYYVTGFFIAVSVMA 201
             ||..:..||.:|::|...            |.::|..||:|::|..|....:.:..||.:|:..
Zfish   158 PDDDPALAGDGDLKRLCLQEDGRKAGWWRVWRPRIWALFEDPYSSKYARYVAFGSLLFILISIST 222

  Fly   202 NVVETVPCGHRP-----GRAGTLPCGE--RYKIVF--------FCLDTACVMIFTAEYLLRLFAA 251
            ..:||    |..     .:...:..|.  |.:||:        ..::..||:.||.|...|:...
Zfish   223 FCMET----HEAFNTIYNKTENVTEGNVTREEIVYEVVTDSWLTYVEGVCVVWFTIEVFTRVVFC 283

  Fly   252 PDRCKFVRSVMSIIDVVAIMPYYIGLGITD-----NDDVSGAFVTLRVFRVFRIFKFSRHSQGLR 311
            ||:.:|.:|.::|||.||::|:|:.:|::.     ..||.|....:|..|:.||||.:||..|||
Zfish   284 PDKMEFFKSPLNIIDFVAVLPFYLEVGLSGLSSKAAKDVLGFLRVVRFVRILRIFKLTRHFVGLR 348

  Fly   312 ILGYTLKSCASELGFLVFSLAMAIIIFATVMFYAEKNVNG----------TNFTSIPAAFWYTIV 366
            :||:||::..:|...|:..||:.::||||:::|||: :..          |||.:||..||:.:|
Zfish   349 VLGHTLRASTNEFLLLIIFLALGVLIFATMIYYAER-IGASPDDPTASAHTNFKNIPIGFWWAVV 412

  Fly   367 TMTTLGYGDMVPETIAGKIVGGVCSLSGVLVIALPVPVIVSNFSRIYH---QNQRADKRKAQRKA 428
            ||||||||||.|||.:|.:||.:|:|:|||.||:||||||:||...|.   ..|:..|:|.:...
Zfish   413 TMTTLGYGDMYPETWSGMLVGALCALAGVLTIAMPVPVIVNNFGMYYSLAMAKQKLPKKKNKHIP 477

  Fly   429 RLARIRIAKASSGAAFVSKKKAAEARWAAQE-------------SGIELDDNYRDEDIFELQHHH 480
            |..:       .|:....|..|.....|:.:             ||:..|.....|:|.|:.   
Zfish   478 RAPQ-------PGSPNYCKPDALAMATASPQRILGNVLGGVLGSSGLTGDCPLAQEEIIEIN--- 532

  Fly   481 LLRCLEKTTDREFVEL---EIPFNGQPKRPGSPSPMASPAHSTNSAAGLLQSCCGRCCSQRYQAC 542
              |..::..|.....|   :.|...|...|...||:                  || ..:|||  
Zfish   533 --RDSKQNGDAASAALANEDCPTIDQVLSPDERSPV------------------GR-TQERYQ-- 574

  Fly   543 GKYMPAASNAQNSQNNQPMDG 563
               ...|....|::..:|.||
Zfish   575 ---QDRACFLLNTREFRPTDG 592

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ShalNP_001097646.1 BTB_POZ_Shal-like 6..144 CDD:349727 50/113 (44%)
Ion_trans 188..415 CDD:459842 97/259 (37%)
DUF3399 471..535 CDD:463381 13/66 (20%)
kcnc3bXP_021325878.1 Potassium_chann 1..29 CDD:431870
BTB_KCNC1_3 34..150 CDD:349721 52/120 (43%)
Ion_trans 205..463 CDD:459842 98/262 (37%)
Blue background indicates that the domain is not in the aligned region.

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