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Protein Alignment Shal and kcnq5a

DIOPT Version :10

Sequence 1:	NP_001097646.1	Gene:	Shal / 40129	FlyBaseID:	FBgn0005564	Length:	571	Species:	Drosophila melanogaster
Sequence 2:	XP_073777019.1	Gene:	kcnq5a / 556841	ZFINID:	ZDB-GENE-090312-185	Length:	1028	Species:	Danio rerio

Alignment Length:	413	Identity:	91/413 - (22%)
Similarity:	172/413 - (41%)	Gaps:	82/413 - (19%)

- Green bases have known domain annotations that are detailed below.

  Fly   143 ENAERLMDDKLS----------ENGDQNLQQLTNMRQKMWRAFENPHTSTSALVFYYVTGFFIAV 197
            ||..|....:||          ::|.:| .:...::..::...|.|.    |..|.|....|..|
Zfish    57 ENQRRNQGARLSLLGKPLAYSAQSGRRN-ARYRKLQNYLYNVLERPR----AWAFVYHAFVFTLV 116

  Fly   198 --SVMANVVETVPC-----GHRPGRAGTLPCGERYKIVFFCLDTACVMIFTAEYLLRLFAA---- 251
              .::.:|..|:|.     .|         |       ...|:...:::|..||::|:::|
Zfish   117 FGCLVLSVFSTIPAHMDLSNH---------C-------LLILEFVMIVVFGLEYIIRIWSAGCCC 165

  Fly   252 -----PDRCKFVRSVMSIIDVVAIMP--YYIGLGITDNDDVSGAFVTLRVFRVFRIFKFSRHSQG 309
                 ..|.:|.|....:||::.::.  ..:..|...|...:.|..:||..::.|:.:..|....
Zfish   166 RYRGWQGRLRFARKPFCVIDIIVLIASIAVVSAGSQGNIFATSALRSLRFLQILRMVRMDRRGGT 230

  Fly   310 LRILGYTLKSCASEL------GFLVFSLAMAIIIFATVMFY-AEKNVNGTNFTSIPAAFWYTIVT 367
            .::||..:.:.:.||      ||||       :||::.:.| .||..| ..|.:...|.|:..:|
Zfish   231 WKLLGSVVYAHSKELVTAWYIGFLV-------LIFSSFLVYLVEKEFN-KQFATYADALWWGTIT 287

  Fly   368 MTTLGYGDMVPETIAGKIVGGVCSLSGVLVIALPVPVIVSNFS---RIYHQNQRADKRKAQRKAR 429
            :||:||||..|:|..|:::....:|.|:...|||..::.|.|:   :..|:.:..:||:....:.
Zfish   288 LTTIGYGDKTPQTWTGRLLSAGFALLGISFFALPAGILGSGFALKVQEQHRQKHFEKRRNPAASL 352

  Fly   430 L-ARIRIAKASSGAAFVSKKKAAEARWAAQESGIELDDNYRDEDIFELQHHHLLRCLEKTTDREF 493
            : |..|:.......:::|      |.|...:|.:......:.|.|....|.:..|...:.|.|::
Zfish   353 IQAAWRLYSTDLSRSYLS------ATWLFYKSVLPPQRKDQGESISSKGHSNRQRLFRRYTTRKY 411

  Fly   494 VELEIPFNGQPKRPGSPSPMASP 516
            .: ::.|..:.:       ||||
Zfish   412 SQ-KLSFRERVR-------MASP 426

Known Domains:

Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 592.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.