DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Shal and Kcng1

DIOPT Version :10

Sequence 1:NP_001097646.1 Gene:Shal / 40129 FlyBaseID:FBgn0005564 Length:571 Species:Drosophila melanogaster
Sequence 2:NP_001100015.1 Gene:Kcng1 / 296395 RGDID:631416 Length:514 Species:Rattus norvegicus


Alignment Length:469 Identity:151/469 - (32%)
Similarity:239/469 - (50%) Gaps:63/469 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly    34 DRRKTDDEKLLINVSGRRFETWRNTLEKYPDTLLG-----SNEREFF-----YDEDCKEYFFDRD 88
            |||:    :::|||.|.::.....||:::|.|.||     :|..:..     ||..|.|:||||:
  Rat    60 DRRR----QIIINVGGIKYSLPWTTLDEFPLTRLGQLKACTNFDDILSVCDDYDVTCNEFFFDRN 120

  Fly    89 PDIFRHILNYYRTGKLHYPKHECLTSYDEELAFFGIMPDVIGDCCYEDYRDR--------KRENA 145
            |..|..||.:.|.|||...:..|..|:.|||.::||..|.:..||...|..:        :||:.
  Rat   121 PGAFGTILTFLRAGKLRLLREMCALSFQEELLYWGIAEDHLDGCCKRRYLQKIEEFAEMMEREDE 185

  Fly   146 ERLMD--DKLSENGDQNLQQLTNMRQKMWRAFENPHTSTSALVFYYVTGFFIAVSVMANVVETVP 208
            |..:|  |:.||....:..:|:...:::....|.||:.....||..::..|:.|:.:...|.|:|
  Rat   186 EEALDSEDQESEGPSTSEGRLSRCMRRLRDMVEKPHSGLPGKVFACLSVLFVTVTAVNLSVSTLP 250

  Fly   209 CGHRPGRAGTLPCGERYKIVFFCLDTACVMIFTAEYLLRLFAAPDRCKFVRSVMSIIDVVAIMPY 273
            ........|  .|.:....||. :::.||..|:.|:|||...||.:..|:||.:::||:|||:||
  Rat   251 SLREEEEQG--QCSQMCHNVFI-VESVCVGWFSLEFLLRFIQAPSKFAFLRSPLTLIDLVAILPY 312

  Fly   274 YIGLGI-----------TDNDDVSGAFVTLRVFRVFRI---FKFSRHSQGLRILGYTLKSCASEL 324
            |:.|.:           |.|..:....:.|||.|..||   .:.:|||.||:.||.|.:.|..|.
  Rat   313 YVTLLVDGAASSRRKPSTGNSYLDKVGLVLRVLRALRILYVMRLARHSLGLQTLGLTARRCTREF 377

  Fly   325 GFLVFSLAMAIIIFATVMFYAEKNV-NGTNFTSIPAAFWYTIVTMTTLGYGDMVPETIAGKIVGG 388
            |.|:..|.:||.:||.:::..|..: :...||||||.:|:.::||||:|||||||.:..|::|..
  Rat   378 GLLLLFLCVAIALFAPLLYVIENEMADSPEFTSIPACYWWAVITMTTVGYGDMVPRSTPGQVVAL 442

  Fly   389 VCSLSGVLVIALPVPVIVSNFSRIYHQNQRADKRKAQRKARLARIRIAKASSGAAFVSKKKAAEA 453
            ...|||:|::|.||..|...|||.|.:.::..:|...|:|:              ::.|.|    
  Rat   443 SSILSGILLMAFPVTSIFHTFSRSYLELKQEQERVLIRRAQ--------------YLIKTK---- 489

  Fly   454 RWAAQESGIELDDN 467
               :|.||:..|.:
  Rat   490 ---SQLSGMSQDSD 500

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ShalNP_001097646.1 BTB_POZ_Shal-like 6..144 CDD:349727 42/127 (33%)
Ion_trans 188..415 CDD:459842 88/241 (37%)
DUF3399 471..535 CDD:463381
Kcng1NP_001100015.1 BTB_POZ_KCNG1_2 60..173 CDD:349728 41/116 (35%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 181..205 7/23 (30%)
Ion_trans 227..471 CDD:459842 90/246 (37%)
Selectivity filter. /evidence=ECO:0000250|UniProtKB:P63142 424..429 3/4 (75%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.