DRSC/TRiP Functional Genomics Resources

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Protein Alignment Shal and kvs-3

DIOPT Version :10

Sequence 1:NP_001097646.1 Gene:Shal / 40129 FlyBaseID:FBgn0005564 Length:571 Species:Drosophila melanogaster
Sequence 2:NP_505407.2 Gene:kvs-3 / 185719 WormBaseID:WBGene00018402 Length:451 Species:Caenorhabditis elegans


Alignment Length:428 Identity:127/428 - (29%)
Similarity:218/428 - (50%) Gaps:64/428 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly    19 VPIATHPLPPPPMPKDRRKTDDEKLLINVSG-----------RRFETWR-------NTLEKYPDT 65
            ||:...|: ..|:|........:.:.:||.|           ||..|.|       :.:|:..|.
 Worm     5 VPLIESPV-AGPVPNGSVVRPPDIVFVNVGGRRARLNSDIIIRRLATSRLAVFCEKSHVERLTDC 68

  Fly    66 LLGSNEREFFYDEDCKEYFFDRDPDIFRHILNYYRTGKLHYPKHECLTSYDEELAFFGIMPDVIG 130
                   :.|: |...||:|:|.|.||.:::::|.|||||.|...|......||.::.|....:.
 Worm    69 -------DAFF-ESTSEYYFERSPIIFEYVIDFYVTGKLHRPMDICPIRLRYELDYWRIPTPFMS 125

  Fly   131 DCCYEDYRDR---KRENAERLMDDKLSEN-------GDQNLQQLTNMRQKMWRAFENPHTSTSAL 185
            .||..:..:.   |....:..:|..|..:       |.|.|        |::|..|||.:|:.|.
 Worm   126 PCCILEENNNIAGKMSTEKAFVDSSLPSSCFDKVVLGPQRL--------KLYRLMENPRSSSGAK 182

  Fly   186 VFYYVTGFFIAVSVMANVVETVPCGHRPGRAGTLPCGERYKIVFFCLDTACVMIFTAEYLLRLFA 250
            :|...:..|:.:|::..::.::|......:       |.:.::.: |:..|::.||.|||.||..
 Worm   183 IFSVGSALFVLLSLLGLILSSMPELQDENK-------EPHYLLHW-LELLCMVYFTFEYLARLLV 239

  Fly   251 APDRCKFVRSVMSIIDVVAIMPYYIGLGITDND-----DVSGAFVTLRVF---RVFRIFKFSRHS 307
            .|.:.:|:||.:::||::.::|:.|.   ..|:     :..||.:.:||.   ||.||||.:|:|
 Worm   240 NPKKAEFIRSPLNVIDLLTVLPFMIE---AFNELQWMKEFRGAMLVVRVMRLARVARIFKLARYS 301

  Fly   308 QGLRILGYTLKSCASELGFLVFSLAMAIIIFATVMFYAEKNVNGTNFTSIPAAFWYTIVTMTTLG 372
            .|||..|.|:|..|:||..|...|...|::|:|.:::.|::...:.|.|||||.|:.::||||:|
 Worm   302 TGLRAFGETMKKSAAELSMLGMFLVTGIMLFSTAIYFFERDEPNSKFYSIPAACWWCVITMTTVG 366

  Fly   373 YGDMVPETIAGKIVGGVCSLSGVLVIALPVPVIVSNFS 410
            |||:||.|..||:|..:.|:.|::|:|.|:.:|:..|:
 Worm   367 YGDLVPITAGGKVVAALASVCGIIVLAFPISMIIDKFA 404

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ShalNP_001097646.1 BTB_POZ_Shal-like 6..144 CDD:349727 37/145 (26%)
Ion_trans 188..415 CDD:459842 77/231 (33%)
DUF3399 471..535 CDD:463381
kvs-3NP_505407.2 BTB_POZ_Kv 28..118 CDD:349626 28/97 (29%)
Ion_trans 210..407 CDD:459842 74/206 (36%)
Blue background indicates that the domain is not in the aligned region.

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