DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Shal and kcng2

DIOPT Version :10

Sequence 1:NP_001097646.1 Gene:Shal / 40129 FlyBaseID:FBgn0005564 Length:571 Species:Drosophila melanogaster
Sequence 2:XP_017950308.2 Gene:kcng2 / 100497537 XenbaseID:XB-GENE-954003 Length:489 Species:Xenopus tropicalis


Alignment Length:427 Identity:145/427 - (33%)
Similarity:227/427 - (53%) Gaps:42/427 - (9%)


- Green bases have known domain annotations that are detailed below.


  Fly    34 DRRKTDD--EKLLINVSGRRFETWRNTLEKYPDTLLG-----SNEREFF-----YDEDCKEYFFD 86
            :|.:.:|  ..::|||.|.::.....|||..|.|.||     :|..|..     ||.:|.|:|||
 Frog    52 NRGQLEDRTRHVIINVGGIKYRIPWTTLENCPLTRLGKLKTCNNYDEIMDVCDDYDINCNEFFFD 116

  Fly    87 RDPDIFRHILNYYRTGKLHYPKHECLTSYDEELAFFGIMPDVIGDCCYEDYRDRKRENAERLMDD 151
            |:|..||.|:.:...|||...:..|..|:.|||.::||..:.:..||....:.::.|.||..|.:
 Frog   117 RNPCAFRTIMTFLAAGKLRILREMCALSFQEELIYWGIEEEQLEWCCLRKLQQKEEELAEAKMYE 181

  Fly   152 KLS----ENGDQNLQQLTNMRQKMWR---AFENPHTSTSALVFYYVTGFFIAVSVMANVVETVPC 209
            ..|    ||....||....:.|.|..   ..||||:.....:|..::..|:|::.::..:.|:|.
 Frog   182 GESGISNENSQSALQDSGRLAQCMKHLRDMVENPHSGIPGKIFACLSVSFVAITAVSLCISTMPD 246

  Fly   210 GHRPGRAGTLPCGER-YKIVFFCLDTACVMIFTAEYLLRLFAAPDRCKFVRSVMSIIDVVAIMPY 273
            .......|  .|.:: |.|  |.|:|.||..|:.|::||...|..:|.|:|:.:::||::||:||
 Frog   247 FRDEEDRG--ECSQKCYDI--FVLETVCVAWFSLEFVLRFIQAESKCVFLRTPLNMIDIMAILPY 307

  Fly   274 YIGL----------GITDNDDVSGAFVTLRVFRVFRI---FKFSRHSQGLRILGYTLKSCASELG 325
            ||.|          |...|:.:....:.|||.|..||   .:.:|||.||:.||.|::.|..|.|
 Frog   308 YITLIVDALSGGKTGGAGNNYLEKVGLVLRVLRALRILYVMRLARHSLGLQTLGLTVRRCTREFG 372

  Fly   326 FLVFSLAMAIIIFATVMFYAEKNVNG-TNFTSIPAAFWYTIVTMTTLGYGDMVPETIAGKIVGGV 389
            .|:..|.:|:.:|:.:::.||..:.. ..|||||.::|:.:::|||:|||||||.:|.|::|...
 Frog   373 LLLLFLCVAMALFSPLVYLAENELGAKQEFTSIPGSYWWAVISMTTVGYGDMVPRSIPGQVVALS 437

  Fly   390 CSLSGVLVIALPVPVIVSNFSRIY----HQNQRADKR 422
            ..|||:|::|.||..|...|||.|    .|.|||.::
 Frog   438 SILSGILLMAFPVTSIFHTFSRSYTELKEQQQRASRQ 474

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ShalNP_001097646.1 BTB_POZ_Shal-like 6..144 CDD:349727 39/121 (32%)
Ion_trans 188..415 CDD:459842 86/245 (35%)
DUF3399 471..535 CDD:463381
kcng2XP_017950308.2 BTB_POZ_KCNG1_2 58..171 CDD:349728 38/112 (34%)
Ion_trans 222..465 CDD:459842 87/246 (35%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.