DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Ltn1 and ltn1

DIOPT Version :10

Sequence 1:NP_730427.1 Gene:Ltn1 / 40127 FlyBaseID:FBgn0262517 Length:1747 Species:Drosophila melanogaster
Sequence 2:XP_012812767.1 Gene:ltn1 / 780202 XenbaseID:XB-GENE-1217544 Length:1779 Species:Xenopus tropicalis


Alignment Length:1913 Identity:502/1913 - (26%)
Similarity:857/1913 - (44%) Gaps:301/1913 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MGGKTKQAPRTKNNAKPSSSSRTAELLGSST---PIFVGF-SAQTDGGGLVPFAPGFASAEQMPD 61
            ||||.||  |||.||:||||.|.||||...:   |.|:|| |:|:|..    :.|....||::  
 Frog     1 MGGKNKQ--RTKGNARPSSSGRAAELLAKESGTIPGFIGFGSSQSDHS----YVPAVQGAEEV-- 57

  Fly    62 SFDAAISPQTQIILRKLSKKDPMTKKKALQELHELIEQSDVEVLKNILPLWPKYYLNLASDPEHT 126
              |:.:....:::||||||:|.:||.||:||...:.::.::|.::.:||.||:.|..::.|.:..
 Frog    58 --DSLVDADFRLVLRKLSKRDAITKLKAMQEFGFMCKEREMETVRGVLPYWPRIYCKISLDLDRR 120

  Fly   127 VREQTQTVLQLLMAKCKKAMAPYLKLLVPVWLGSRFDTYAPAASIASQSFRDTFAGNANRSREVC 191
            |||.||...:.|:.|.||.:||:||.|:..||.::.|||:||||.|..:|...|.  |::..|..
 Frog   121 VREATQQAFEQLILKVKKYLAPHLKSLMGFWLIAQCDTYSPAASSARVAFEAAFP--AHKQPEAL 183

  Fly   192 MHCQVEILEYATRNLTFHTAATLSIGKSLTPEDAEQKYQRVIISSLKLLSFFMGQTAQTEELSQV 256
            ..|:.||:.....:|...|..|||..:::..||.|.||.||:..||..|...:....::|. |.:
 Frog   184 AFCKEEIMNVLLDHLLKETPDTLSDTQAVPIEDRESKYFRVVTCSLLALKRLLCMLPRSEN-SSL 247

  Fly   257 KEGFGTLVAHQKFWSFAKHKVPAIKAAWFECIYHILQSVALLDVITPQKTQLTNLCFQFIDDADP 321
            :|....|::..|||.::||...:|::|:||.:..:.|...  ||:..:.::|.......|||:|.
 Frog   248 QERLAHLLSQSKFWKYSKHSTSSIRSAFFELMSALCQCSP--DVLRAEASRLCPAVLLSIDDSDA 310

  Fly   322 VVAPHIWGCVLLLQSNYVDWFVPLNIRKTLLPKLSSLLQNGFNRNAQAICPNLLPFLSKVTQASL 386
            ||.|.:|..||...:...|.:..:|.:|.:||||.|:|:.|....|..|.||||||:|:|....:
 Frog   311 VVCPALWEAVLYTITTIEDCWEHVNAQKGVLPKLWSVLREGGRGLATVIFPNLLPFISRVPTNII 375

  Fly   387 QDLDIYDFYQRFFDDMKLAVTKKFDPPLSKSDCIVIHNAYFECLRFLMQQINNNKQREQKEEEFS 451
            :...  |||..||:.:...::.: ....|.::|..|.:||.|||||.||:....::..:|.::..
 Frog   376 KTPT--DFYSNFFNSLGQGLSSE-RAVASPAECSAIISAYMECLRFAMQENAGEEEENKKVQQIL 437

  Fly   452 FS-----LLDNNVLEPIAWLLKSDSTHVKIFFQHSSALVAFWDRQINNR-LDN--GDLYAKLLNK 508
            .|     |:|:::.:|     |..::  .:|.|....|.: |:::..:: ||:  ..::|.||.:
 Frog   438 ISDQLMPLIDSSLKDP-----KLQNS--PLFSQVEETLYS-WEKKAESQGLDDKLSRIHATLLRE 494

  Fly   509 FWIRIFELVTQDLSAEEVNEQLLGHVLLLVQDLHMANPSL-----ESPSVKFVEGPNEKIEKSEP 568
            ||..:..:....:...|..|:.|..|..|:|.|...|..|     :...::|   ..|..::|:.
 Frog   495 FWENLAHICVSHVDVIEAGEKNLAGVSGLLQVLQNPNCLLKVNKKKKAKIRF---KGEDDDESDA 556

  Fly   569 TTPVKKAQEAAAFI-----------------QKELKQLVIKLVRICLDKANKGSGSGTSSSRYIE 616
            .:.|.::|..:.||                 |:.|:.||.||..:.:...     |...|.:::.
 Frog   557 VSHVSESQPMSKFIMETCSSSGRDPGIAQLRQERLEDLVCKLAELSMVYI-----SEQRSQQHLM 616

  Fly   617 QIRTLTKMFNDAAFYKSLTDDGDLASALN----------------------KFVSLLGQLSCQAC 659
            .:..|...|.....::.|..........|                      |.:......|.:..
 Frog   617 FLAALLSTFPSIRVFQVLLQQSSEEDPKNLNSPDHDVTPRHKNPAVQFLYAKLIFWFNDKSLEES 681

  Fly   660 ESVVEIVFEIL----------PLLETGKRFEYIENTLMKLPQHGVQN--------------LLLH 700
            :.:|:|::.:|          .||:...:..:..:..:.:.|....:              :|..
 Frog   682 DFLVDILYSVLFCCTDSSERKHLLDDMTKMNFKWSVFLYIIQKACTDPEKYSLASDWLKGEVLGE 746

  Fly   701 RL--LSYPLCAEAAVRQMLSGPETCE----MIARIAEE------VVVDNDREK-LNLLHKCFFQT 752
            ||  |:..||....:.:.......|.    :::.:..|      ::.|...|| :|.||..    
 Frog   747 RLICLANDLCTSGLMDKATPSEAYCSKKWALLSLVLSEHVHNEYLIADAYVEKIINKLHSA---- 807

  Fly   753 DTGDILINAKTVDKILLSMCGPLEQPVVDDAVEVCGSFIAQIMPVICSNNNSSLHV--RQHIFLK 815
                 |:.|:.     ||..|.|||.|         |||..:.....|:....|.:  .:.:.|.
 Frog   808 -----LMKARN-----LSKAGHLEQSV---------SFICDVGSNFFSSIKGCLQMPSAEDLLLT 853

  Fly   816 LFKFSLEHRPEDYLSEDTLWEITTCWQDGLSS-----KDIEIDDDMLKCCAGIVEELANSAELKA 875
            :|:...:.....::||..|.::...|..||.|     |::....:.||..|..|::...::.|..
 Frog   854 IFQLCAQASDTSHMSESLLLKLKNTWLAGLHSLVCQYKNMPQGSNFLKQSAQWVKDQIQTSHLNV 918

  Fly   876 DTLDGMAEAMAKFVICSTENIEDEYKRLERIDETLTALLETPLKTTDKVQQFENHCVLLEALHGS 940
            .:|..:        ||:   ::|.|..:  :|.:|:........|...:...|....:..||   
 Frog   919 KSLQSL--------ICT---VDDLYSTI--LDSSLSGFSLLAEHTASMMPSAETWQKMRHAL--- 967

  Fly   941 VTAGVPFENACLSRNEILPLLQ-RSTLNFSTIYKLVYQFPPPQDTNDPEDELTEDYCDPNADVLK 1004
                   .:..||:    |||: |.::|..|....:..|        |:..|....|  .|.:|.
 Frog   968 -------SSQWLSK----PLLEGRLSMNTETSGTDLKSF--------PKTWLPSHLC--TASLLS 1011

  Fly  1005 KWNEPLIAELLQCIRVAGTAECWLEMSVLQSSTEELVLILS-----EKVQSFMGNSSDL---VAI 1061
            |    :...||:..:.....|..:::::   :..|::..|.     ||..:.:|...::   :.:
 Frog  1012 K----MALRLLEKEKSLKEEEIGVKINI---TVAEMLYSLQWCEELEKPPTLIGECCEMLCSLGV 1069

  Fly  1062 VKERLQQAAVQQSSVIDCRLLSYLRFCPQYAAFEESASILLHE---------DLSENL-----VT 1112
            ..|::...:|....:::   |.|.|.....:.:..:|:..:|:         .|:|:.     ||
 Frog  1070 SHEKVMDLSVHLPGLLE---LLYNRSKEDGSLWSLTANRFIHKRGAGPSELLPLTEDTEKYFPVT 1131

  Fly  1113 QGALKTYVIALQFLLPKLSQKAI--------TLS-SAIMGTEPPEIWVKAAVFHALLLNNFEGDV 1168
            .|:|.|......|:.|:|.::.:        |.| ||:..|:       ....:..::|:..|. 
 Frog  1132 LGSLHTIQSLSAFMCPELKEELVIQCTARLMTCSASAVSCTD-------GGFGYLAIINSCLGS- 1188

  Fly  1169 NEQTDRNIIVSAVQFMTSIGERQASQKDLLHYNVEIQRQPYESVINTVEFIKLLTEVLKRFPYEL 1233
            :....:.|:...::.|.|..:   .|:|:..::..:|......:...||.|:.|:.:||.....:
 Frog  1189 DSDLCQEILPGVLKVMLSWKD---DQEDIFLFSSNVQDSSQSLIGLNVEMIRFLSILLKYLASSV 1250

  Fly  1234 SI---KNWDAIRIGLSSWVLSVSKSIAQYQDPKTSLFIVAVYELFAALIDFIRSEKQKSSTELLK 1295
            |.   .:||.|...:.:|:.|..:|.|.|..|...||..|..:|...:..:..|....::..|..
 Frog  1251 SSLVDVDWDFIMCSMLAWLESACESSAAYHIPLVRLFACASCDLATEISHYFESVATSTTMSLPA 1315

  Fly  1296 NMIDEWDSLFAKEVNLVLFKSYYLLTHEVSVDPGFQACYEALLEQITPVIER----------LDY 1350
            |::.||...|::.:..::......:..|      ::|...:.:..:...:.|          |::
 Frog  1316 NLMSEWKEFFSEGIYSLMLPMLVRIAEE------YKASETSHMSHVLKSLGRTLGYISKEQLLNH 1374

  Fly  1351 SFVYSFC---KSNSNITLDHLCNFLFKQLYSVQHSVRLSAVHSLRQL---TPHFVADDIELNEKQ 1409
            .....|.   |:|...:|..|.|.|...|...:.||:::..|.|.::   .|.|..:|::....:
 Frog  1375 KLPAKFVAGQKTNLTDSLQSLLNTLAPLLLYRERSVQITVYHLLDKIMADLPGFDDEDLKSYGDE 1439

  Fly  1410 SESLDASTTICKWHFLNRFEDYLTRYDALITKYLEEFTFKLSELDDLEPIDRH--NALSYLFLWD 1472
            .|....|........|...||       |:...|:|  ..:.|...:||:...  ..|.||..|.
 Frog  1440 DEEPALSPPAALMSVLAIQED-------LVESILKE--IPVGEFAVIEPLKEEFCFVLGYLLTWK 1495

  Fly  1473 CIINACAKSPVALRAVYTNWLNDNKYEENFLHFLFRAMPVD-ILKNHGAKVHSNG---------- 1526
            .|:.....:...|||:|:.:|...|.....|:.||:.||.: :|....:.:.|..          
 Frog  1496 LILTFFKAASSQLRALYSQYLRKTKSLNKLLYNLFKLMPHNPVLPGQASDMPSKEPKTFFTEELQ 1560

  Fly  1527 -VYKELTWSQQKDRHLPLERYACHLYTEVLRKLPAVVRRWWNATQSRQKNFIDNLTTNYVSSLIC 1590
             ..|.....||:..||     ||.:|...|:.|||:||.|||..:.|..|.:|..||.||||::.
 Frog  1561 LAVKGTATVQQEVPHL-----ACCVYHMTLKDLPAMVRLWWNGCEKRIFNVVDRFTTKYVSSVLS 1620

  Fly  1591 SEELKAIANRKEKHENMQVTVHSSTREVLAVYAIDEARMELVITLAPNYPLGAVKVECGKQIGGR 1655
            |:|:.::....:..:.|.|...|:||||:|.|::|:..:||:|.|..|||||::.||.|:::|..
 Frog  1621 SQEISSVQLSTQVFDGMTVKARSTTREVIATYSVDDICIELIIQLPQNYPLGSITVESGRRVGVA 1685

  Fly  1656 ASS-RNVGMQLTIFLTHQNGTIYDGLTMWKNNLDKKFEGVEECYVCYTVIHQETCQLPKLTCKTC 1719
            ... ||..:||..:||||||:|.:||.:||||:||:|||||:|.:|::|||.....|||..|:||
 Frog  1686 VQQWRNWMLQLNTYLTHQNGSIMEGLALWKNNVDKRFEGVEDCMICFSVIHGSNYSLPKKACRTC 1750

  Fly  1720 KKKFHGPCLYKWFTTSSKSTCPICRNVF 1747
            |||||..|||||||:|:|||||:||..|
 Frog  1751 KKKFHSECLYKWFTSSNKSTCPLCRETF 1778

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ltn1NP_730427.1 COG5219 <1461..1747 CDD:227544 124/300 (41%)
ltn1XP_012812767.1 COG5219 <1490..1778 CDD:227544 123/292 (42%)

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