DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Ltn1 and ltn1

DIOPT Version :10

Sequence 1:NP_730427.1 Gene:Ltn1 / 40127 FlyBaseID:FBgn0262517 Length:1747 Species:Drosophila melanogaster
Sequence 2:XP_073770794.1 Gene:ltn1 / 100000122 ZFINID:ZDB-GENE-091204-127 Length:1776 Species:Danio rerio


Alignment Length:1813 Identity:466/1813 - (25%)
Similarity:793/1813 - (43%) Gaps:298/1813 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly    88 KALQELHELIEQSDVEVLKNILPLWPKYYLNLASDPEHTVREQTQTVLQLLMAKCKKAMAPYLKL 152
            :|:||...:.::...:|:|.:||.||:.|..::.|.:..|||.||...:.|:.|.|:.:|||||.
Zfish   108 QAVQEFGAMCQERQTDVVKGVLPYWPRIYCRISMDHDRRVREATQQAFEQLVLKVKRNLAPYLKS 172

  Fly   153 LVPVWLGSRFDTYAPAASIASQSFRDTFAGNANRSREVCMHCQVEILEYATRNLTFHTAATLSIG 217
            ::..||.|:.|||:||||.||.:|:..|.  .|:..|....|:.|||.....||...||.|||..
Zfish   173 IMGHWLISQCDTYSPAASAASAAFQAAFP--LNKQTEAISFCKDEILNVLQDNLLKETADTLSDP 235

  Fly   218 KSLTPEDAEQKYQRVIISSLKLLSFFMGQTAQTEELSQVKEGFGTLVAHQKFWSFAKHKVPAIKA 282
            ||:..|:.|.||.|::.|||..|...:....: ::..|:|:|...|:...|||.::|||.|.|:.
Zfish   236 KSVPGEEREAKYIRLLTSSLLALKRLLCALPE-KDREQIKDGLSQLITQAKFWKYSKHKTPQIRG 299

  Fly   283 AWFECIYHILQSVALLDVITPQ--KTQLTNLC---FQFIDDADPVVAPHIWGCVLLLQSNYVDWF 342
            |:||.|       |.:...|||  :.:....|   ...|||.||:|.|.:|..||.:.|...:.:
Zfish   300 AFFELI-------ATMCERTPQLIQAEAARACSAVLLSIDDTDPMVLPPLWEAVLHIMSCVDNCW 357

  Fly   343 VPLNIRKTLLPKLSSLLQNGFNRNAQAICPNLLPFLSKVTQASLQDLDIYDFYQRFFDDM--KLA 405
            :.::.:|.:||||..||:.|....|.::.||||||:||: .|.::..|: :|.:.|...:  .|:
Zfish   358 MHVSAKKGVLPKLWVLLKEGARGLATSLHPNLLPFISKL-PAEVKQPDL-EFSRTFLTSIIEGLS 420

  Fly   406 VTKKFDPPLSKSDCIVIHNAYFECLRFLMQQINNNKQREQKEEEFSFSLLDNNVLEPIAWLLKSD 470
            ..:....|   |:...|.::..|||||::.|   |...||::......|:...:|..|...|||.
Zfish   421 SDRASSSP---SESAAIIDSTMECLRFIILQ---NAGDEQEQRNIQNMLISEQLLPLIDRALKSP 479

  Fly   471 STHVKIFFQHSSALVAFWDRQINNRLDNGDLYAKLLNKFWIRIFELVTQDLSAEEVNEQLLGHVL 535
            :......|...|.::..|:::...:  :...:.:||:.||..:..|.|..:..||.....|..:.
Zfish   480 ALQSGPLFPQLSDMLLSWEKRAAGK--DSSTFQRLLSDFWEGLSRLCTAYVDCEESERTALEGIA 542

  Fly   536 LLVQDLHMANPS--------LESPSVKFVEGPNEKIEKSEP--TTPVKKAQEAAAFIQKELKQLV 590
            ||:|  .|.||:        .::..:.|.: ..|:.:..||  ..||.:.|: .....:.|..||
Zfish   543 LLLQ--IMQNPNSVGKQTKKKKTVKISFAD-HEERGQGDEPPRQAPVVEEQD-CPLRHEHLLDLV 603

  Fly   591 IKLVRICLDKANKGSGSGTSSSRYIEQIRTLTKMFNDAAFY-----------------KSLTDDG 638
            .:|..:     |....|...|.|::..:..|...|.....:                 :.||::.
Zfish   604 CQLAEL-----NMVYVSERESERHLRFLSQLLGAFPRPEVFQVLLRPEEMKPEMGSELRPLTENA 663

  Fly   639 DLASALNKFVSLLGQLSCQACESVVEIVFEILPLLETGKRFEYIENTLMKLPQHGVQNLLLHRLL 703
            .:...|.:....|.|...:..:.:|::||..|....:......|.|.:.|.....|...|:.:..
Zfish   664 AVHFLLQRVAVWLKQEDRKDTDFLVDMVFSSLQCCSSDSDKTLILNQISKDLNWSVTLQLIEKAC 728

  Fly   704 SYPLCAEAAVRQM-----------LSGPETCEMIARIAEEVVVDNDREKLNLLHKCFFQTDTGDI 757
            |.|:..|..|..:           |:| :.||| .................|:.....|....|.
Zfish   729 SDPVRLEVCVGWLRGSVLGERLVGLAG-DLCEM-GLCGSPSSSSYHAHGWPLISLALSQQHNNDP 791

  Fly   758 LINAKTVDKIL------------LSMCGPLEQPVVDDAVEVCGSFIAQI-------------MPV 797
            ||....|::|:            :|..|.|| |:|....:|..:|.:.:             |.|
Zfish   792 LIGKVYVEQIIDKLHATLSEAKGMSDAGNLE-PLVTFISDVAATFFSSVKSCLLLTSAEELLMTV 855

  Fly   798 --ICSNNNSSLHVRQHIFLKL-------------------FKFSLEHRPEDYLSEDTLWEITTCW 841
              :|:.:.:..|:...:.|||                   .|.:|.|       ...||..:...
Zfish   856 FQLCAQDQTVTHLSDALLLKLRHAYIAGIESLIGFLGAGVTKGTLLH-------NIALWVKSQLL 913

  Fly   842 QDGLSSKDIEIDDDMLKCCAGIVEELANSAELKADTLDGMAEAMAKFVICSTENIEDEYKRLERI 906
            ...::.|.:::   :::....:.:.:|::.:...        ..::|:.|.|.. |:|::.:.: 
Zfish   914 NTPMTVKSLQV---LVQAVESLAQTIASAQKTSC--------LFSQFICCLTPT-EEEWRHIRQ- 965

  Fly   907 DETLTAL----LETPLKTTDKVQQFENHCVLLEALHGSVTAGVPFENA--CLSRNEILPLLQRST 965
                 ||    |..||.           |..|.     ||...|..:.  |.:.|.:...|..|.
Zfish   966 -----ALPPQWLRNPLL-----------CGRLR-----VTGQNPSMDVWRCRASNRLPAHLCVSA 1009

  Fly   966 LNFSTIYKLVYQFPPPQDTNDPEDELTEDYCDPNADVLKKWNEPLIAELLQCIRVAGTAECW--- 1027
            |    :.::::....|.| ...|.:|:|   .|:   ||.    :::|:...::       |   
Zfish  1010 L----LGRVIFTAASPDD-QQVEADLSE---IPD---LKH----IVSEIFYGLQ-------WCEE 1052

  Fly  1028 LEMSVLQSSTEELVL---ILSEKVQSFMGNSSDLVAIVKERLQQAAVQQSSVIDCRLLSYLRFCP 1089
            :|.|.|..|....:|   .|.:|:.:        ::::|..|......:|               
Zfish  1053 MEFSPLTVSEYHKLLQSWSLEQKIHN--------ISLIKSALTDTLFTRS--------------- 1094

  Fly  1090 QYAAFEESA---SILLHEDLSENLVTQGALKTYVIALQFLLPKLSQKAITLSSAI---MGTEPPE 1148
                 :|:.   |:.|.:.|..|.:..|.:|....:::...| ||:.::.....:   :.:|..|
Zfish  1095 -----QENGSLWSLCLAKYLQINKMDPGDIKGLYGSVESFFP-LSEHSVNTLQVLCPFLASEDRE 1153

  Fly  1149 IWVKAAVFHALLLNNFEGDVNE-------------QTDRNI---IVSAVQFMTSIGERQASQKDL 1197
            ..:...|...|...:.|.|.::             |.|..:   |:.||  :::|.|.:.|:::.
Zfish  1154 SLIALCVAELLNWQDQEHDCSDGVLCCLAVLLCCLQADAAVEDEILLAV--VSTIAEWRNSREEW 1216

  Fly  1198 LHYNVEIQRQPYESVINTVEFIKLLTEVLKRFPYELSIKNWDAIRIGLSSWVLSVSKSIAQYQDP 1262
            ..:|.::::.....::..||.::.|..::.|.|..|....||.:...:.:|:.:.|::.|.:.:|
Zfish  1217 FLFNSDLEKASAARLLLAVEMMRFLCWLVDRSPAVLGNTYWDLLLCSMLAWLETASENSAVFWNP 1281

  Fly  1263 KTSLFIVAVYELFAALIDFIRSEKQKSSTELLKNMIDEWDSLFAKEVNLVLFKSYYLLTHEVSVD 1327
            ...||:....||...|.:|..|.......:|...:..||...|.:.::.:|..    |..::.:|
Zfish  1282 WVQLFVCTNCELIVRLSEFFTSPPAGVLEQLPAELSSEWKEFFQEGIHNLLLP----LLIKIPMD 1342

  Fly  1328 -----------PGFQACYEAL----LEQITPVIERLDYSFVYSFCKSNSNITLDHLCNFLFKQLY 1377
                       |..:|..|||    :|.:|.  .:|...|| :..||:.:..|..|.|.|...|.
Zfish  1343 FPDPDDPMFPLPVLRAVGEALTYIPVELLTQ--NKLPPRFV-ADQKSSLSEPLQTLLNSLSPLLL 1404

  Fly  1378 SVQHSVRLSAVHSLRQLTPHFVADDIELNEKQSESLDASTTICKWHFLNRFEDYLTRYDALIT-- 1440
            .....::|:..|.|.::.|.....|.|....:||..|..            |..|:...||::  
Zfish  1405 FRARPLQLAVYHILNKVMPLLPESDSESASAKSEDEDGE------------EPCLSPPAALMSIL 1457

  Fly  1441 ----KYLEEF--TFKLSELDDLEPIDRHNA--LSYLFLWDCIINACAKSPVALRAVYTNWLNDNK 1497
                :.||..  ..::.|...::|:...:.  |.||..|..::.....|...|||.|:..|..::
Zfish  1458 STTEELLENILGAVQVGEFAVVQPLSMEHCCILGYLLSWKLLLAFFKASSSHLRAQYSLHLKKSR 1522

  Fly  1498 YEENFLHFLFRAMPVDILKNHGAKVHSNGVYKELTWSQQKDRHLPLE--RYACHLYTEVLRKLPA 1560
            .....|..|||.||........:........:.|:.|..|..:|..|  ..||.:|...|:.|||
Zfish  1523 SLHKLLLHLFRLMPESPSMPGQSAAPKTFFTESLSLSPGKTENLQFEVSHLACSVYYGALKDLPA 1587

  Fly  1561 VVRRWWNATQSRQKNFIDNLTTNYVSSLICSEELKAIANRKEKHENMQVTVHSSTREVLAVYAID 1625
            :||.|||:.:.|..:.:|..|:.|||.::.::|:.::.:.....|||.|...|:||||:|.|:::
Zfish  1588 MVRLWWNSQEKRIFSIVDKFTSKYVSGILSAQEISSVQSSTVTFENMTVKARSATREVIATYSVE 1652

  Fly  1626 EARMELVITLAPNYPLGAVKVECGKQIGGRASS-RNVGMQLTIFLTHQNGTIYDGLTMWKNNLDK 1689
            :..:||||.|..|||||::.|:.|:::|..... ||..:||:.:||||||:|.:||::||||:||
Zfish  1653 DVFIELVIQLPQNYPLGSILVDSGRRVGVAVQQWRNWMLQLSTYLTHQNGSILEGLSLWKNNVDK 1717

  Fly  1690 KFEGVEECYVCYTVIHQETCQLPKLTCKTCKKKFHGPCLYKWFTTSSKSTCPICRNVF 1747
            :|||||:|.:|::|||.....|||..|:|||||||..|||||||:|:|||||:||..|
Zfish  1718 RFEGVEDCMICFSVIHGSNYSLPKKACRTCKKKFHSACLYKWFTSSNKSTCPLCRETF 1775

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ltn1NP_730427.1 COG5219 <1461..1747 CDD:227544 119/290 (41%)
ltn1XP_073770794.1 None

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