DRSC/TRiP Functional Genomics Resources

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Protein Alignment: Gem2 and Gemin2

Sequence 1:NP_001262034.1 Gene:Gem2 FlyBaseID:FBgn0036850 Length:245 Species:Drosophila melanogaster
Sequence 2:NP_445841.1 Gene:Gemin2 RGDID:620842 Length:269 Species:Rattus norvegicus

Alignment Length:261 Identity:75/262 (29%)
Similarity:113/262 (43%) Gaps:38/262 (15%)


  Fly    11 QLQALEICEPDSSFDPQKPPESGEEYLMHMFYERKRCPAVVTKR--SSKI-RNNTGNTTLEMLDN 72
            :|..:|.|:....|||..||.:.:|||..:..|..:||.||..:  ..|: |..:.|.:|.... 
  Rat    16 RLLPVEPCDLTEGFDPSVPPRTPQEYLRRVQIEAAQCPDVVVAQIDPKKLKRKQSVNVSLSGCH- 79

  Fly    73 PELPPFKCLLPTPEWRDEQVKSFQAARSQVLVLRKELANNNYDQSGEPPLTSDQEKWKEFCRNQQ 137
               |..:...||.:|:.:||..|.:.|..|...|....:...|.:...|.:.|:|.||:||..::
  Rat    80 ---PAPEGYSPTLQWQQQQVIQFSSVRQSVHKHRNHWKSQQLDSNVTMPKSEDEEGWKKFCLGER 141

  Fly   138 -------------------------PLLSTLLHLTQNDLELLLEMLSKWLQDPNTTVDLLHDVWL 177
                                     ||||.:..:.|..:..:||.||.|..:.:.|.:      |
  Rat   142 LCAEGATGPSTDESPGIDYVQVGFPPLLSIVSRMNQATITSVLEYLSNWFGERDFTPE------L 200

  Fly   178 ARWLYATLVCLHLPLEPHVFSTLRYIARTCIHLRNQLKEDEVQRAAPYNLLLTLTVQVFAQNDFK 242
            .||.||.|.||..||.|...|.:|.:||.|..:|..:...:.:|....|||:.|..:.|.|.|..
  Rat   201 GRWFYALLACLEKPLLPEAHSLIRQLARRCSEVRLLVGSKDDERVPALNLLICLVSRYFDQRDLA 265

  Fly   243 D 243
            |
  Rat   266 D 266

Known Domains:


GeneSequenceDomainRegion External IDIdentity
Gem2NP_001262034.1 SIP1 18..239 CDD:282754 71/249 (29%)
Gemin2NP_445841.1 SIP1 22..261 CDD:282754 70/249 (28%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 C182445748
eggNOG 1 0.900 E1_28H7D
Hieranoid 1 1.000
Homologene 1 1.000 H37827
Inparanoid 1 1.050 107 1.000 Inparanoid score I4753
OMA 1 1.010
OrthoDB 1 1.010 D1235594at2759
OrthoFinder 1 1.000 FOG0006552
OrthoInspector 1 1.000 T1088639
orthoMCL 1 0.900 OOG5_132394
Panther 1 1.100 LDO PTHR12794
Phylome 00.000 Not matched by this tool.
TreeFam 1 0.960
1211.860

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