DRSC/TRiP Functional Genomics Resources

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Protein Alignment Gem2 and gemin2

DIOPT Version :9

Sequence 1:NP_001262034.1 Gene:Gem2 / 40087 FlyBaseID:FBgn0036850 Length:245 Species:Drosophila melanogaster
Sequence 2:NP_001017608.1 Gene:gemin2 / 550271 ZFINID:ZDB-GENE-030131-3756 Length:253 Species:Danio rerio


Alignment Length:267 Identity:72/267 - (26%)
Similarity:112/267 - (41%) Gaps:52/267 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly    11 QLQALEICEPDSSFDPQKPPESGEEYLMHMFYERKRCPAVVTKR--SSKIRNNTGNTTLE-MLDN 72
            :|..::.|:.: .:...:||.:.:|||..:..|...||.||..:  ..|::..:.|.::. .|..
Zfish     3 RLLPVDSCDTE-EYTLTEPPRNPQEYLRFVQREASLCPDVVVAQIDPKKLKKQSVNVSITGCLAA 66

  Fly    73 PE--LPPFKCLLPTPEWRDEQVKSFQAARSQVLVLRKELANNNYDQSGEPPLTSDQEKWKEFCRN 135
            ||  .|.||       |:.:||..|...|..|...|:.......|.:...|.|.|::.||.||..
Zfish    67 PEGFSPSFK-------WQQQQVSRFSEVRQSVNKHRQHWKAQFLDDNVVMPKTEDEDGWKRFCLG 124

  Fly   136 QQ-------------------------PLLSTLLHLTQNDLELLLEMLSKWLQD----PNTTVDL 171
            :.                         |.||.:..|:|:.:..:||.|..|.::    |.     
Zfish   125 ENVCLEIQLKEEDGVNPGLDYVKTGFPPFLSIVSKLSQSTVSAVLEYLINWFEERAFVPQ----- 184

  Fly   172 LHDVWLARWLYATLVCLHLPLEPHVFSTLRYIARTCIHLRNQLKEDEVQRAAPYNLLLTLTVQVF 236
                 |.|||||.|.||..||.|...|.:|.:||.|..:|..|:..:..|.:..||::.:..:.|
Zfish   185 -----LGRWLYALLACLEKPLLPEAHSLIRQLARRCSAVRANLESKDDDRLSALNLMICIVARYF 244

  Fly   237 AQNDFKD 243
            .|||..|
Zfish   245 EQNDLAD 251

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Gem2NP_001262034.1 SIP1 18..239 CDD:282754 67/254 (26%)
gemin2NP_001017608.1 SIP1 10..247 CDD:282754 67/254 (26%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170596842
Domainoid 1 1.000 91 1.000 Domainoid score I7730
eggNOG 1 0.900 - - E1_28H7D
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H37827
Inparanoid 1 1.050 98 1.000 Inparanoid score I5023
OMA 1 1.010 - - QHG55374
OrthoDB 1 1.010 - - D1235594at2759
OrthoFinder 1 1.000 - - FOG0005780
OrthoInspector 1 1.000 - - oto39349
orthoMCL 1 0.900 - - OOG6_104791
Panther 1 1.100 - - LDO PTHR12794
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X6261
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
ZFIN 00.000 Not matched by this tool.
1514.770

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