DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Gem2 and smi-1

DIOPT Version :10

Sequence 1:NP_649092.1 Gene:Gem2 / 40087 FlyBaseID:FBgn0036850 Length:245 Species:Drosophila melanogaster
Sequence 2:NP_001022847.1 Gene:smi-1 / 189726 WormBaseID:WBGene00004886 Length:254 Species:Caenorhabditis elegans


Alignment Length:165 Identity:29/165 - (17%)
Similarity:58/165 - (35%) Gaps:47/165 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly   349 TADSAAEHQSLHDSELKMKILHIEVLQETIRNLQTQLLENKAKETERQNRICELEDELKDANVKQ 413
            ::.|:.:..|.:::|.:    .:||:     ||....||:....:....:||:|     |.:...
 Worm    44 SSPSSPKSPSFNNNEEE----RLEVV-----NLSGMALESLPNPSLNLAQICKL-----DLSNNH 94

  Fly   414 LLLKTKIATSKAAASSAASVSSSGKGATETATADDGPTVPVVPNE----REAKMLAFASTFLMIN 474
            |....:..|::.....|..|.|:              .:..:||.    .:.|.|..:..||:..
 Worm    95 LQTIPESLTARLLNLIALDVHSN--------------QIKALPNSIGCLSKLKTLNVSGNFLVSF 145

  Fly   475 PHGAPFEQVWAYVGRYVNEMKPKELEDMFARYRQL 509
            |...               ...:.||::.|.:.:|
 Worm   146 PKSI---------------QHCRSLEELNANFNKL 165

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Gem2NP_649092.1 SIP1 21..238 CDD:461493
smi-1NP_001022847.1 SIP1 17..249 CDD:461493 29/165 (18%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.