DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment SmydA-2 and Smyd2

DIOPT Version :10

Sequence 1:NP_649084.1 Gene:SmydA-2 / 40075 FlyBaseID:FBgn0036839 Length:530 Species:Drosophila melanogaster
Sequence 2:NP_081072.1 Gene:Smyd2 / 226830 MGIID:1915889 Length:433 Species:Mus musculus


Alignment Length:380 Identity:86/380 - (22%)
Similarity:144/380 - (37%) Gaps:78/380 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly    58 GRHLRATRDIKIGEQILKEAP-----LVLGPKVASAPLCLGCHRNLLAPGKPRGNYHKCSSCSWP 117
            ||.|||.|...:|: :|...|     |.:|.:......|......|          .||..|...
Mouse    18 GRGLRALRPFHVGD-LLFSCPAYACVLTVGERGHHCECCFARKEGL----------SKCGRCKQA 71

  Fly   118 L-CGKEC--EDSVHHKAECQLM--SGSNFQSKINYVPGEEERKESAYCVIMLLRCMHLKDKDPDA 177
            . |..||  ||...||.||..|  .|.|:.      |.|..|..:.   |:..:.:|.:....:.
Mouse    72 FYCDVECQKEDWPLHKLECSSMVVLGENWN------PSETVRLTAR---ILAKQKIHPERTPSEK 127

  Fly   178 FLKLYNLEDHLKERLETPLYQVLRANLIT---FIKTVLGMKDWPEMDILRIAAILDTNTFEVRQP 239
            .|.:...|.|| ::|:.....::::::..   |....|...|...:.:|  .|.::.|.|.:...
Mouse   128 LLAVREFESHL-DKLDNEKKDLIQSDIAALHQFYSKYLEFPDHSSLVVL--FAQVNCNGFTIEDE 189

  Fly   240 RERRKIRALYPGAAMISHDCVPNMRHRFDDDMNIVFLAKRKIAKGEILSISYTQPLRSTIQRRVH 304
            .......|::|..|:::|.|.||:...:...:..| .|.::|..|:.:..||...|..|..|...
Mouse   190 ELSHLGSAIFPDVALMNHSCCPNVIVTYKGTLAEV-RAVQEIHPGDEVFTSYIDLLYPTEDRNDR 253

  Fly   305 LRQAKCFDCSCARC--QDPEELGSFAGAQTCLKCKAGKIISLNPLLNSAPWKCQLCNFKRSAKDV 367
            ||.:..|.|.|..|  :|.::          .|.:..|       |:|.|....:.:..|.|::|
Mouse   254 LRDSYFFTCECRECTTKDKDK----------AKVEVRK-------LSSPPQAEAIRDMVRYARNV 301

  Fly   368 V---------TSDAELQQELE-SLDKTTPVALEEFIYRHRADLHETNTHILQAKY 412
            :         .|.:||.:..| |.:|.:.|            ..::|.::|...|
Mouse   302 IEEFRRAKHYKSPSELLEICELSQEKMSSV------------FEDSNVYMLHMMY 344

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SmydA-2NP_649084.1 zf-MYND 9..46 CDD:460312
SET_SMYD <227..318 CDD:380997 24/90 (27%)
Smyd2NP_081072.1 SET_SMYD2 7..269 CDD:380979 67/274 (24%)
zf-MYND 52..90 CDD:460312 12/47 (26%)
TPR_10 388..422 CDD:463861
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.