DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Prp6 and prpf6

DIOPT Version :10

Sequence 1:NP_649073.1 Gene:Prp6 / 40064 FlyBaseID:FBgn0036828 Length:931 Species:Drosophila melanogaster
Sequence 2:NP_001025642.1 Gene:prpf6 / 595030 XenbaseID:XB-GENE-997713 Length:972 Species:Xenopus tropicalis


Alignment Length:946 Identity:679/946 - (71%)
Similarity:802/946 - (84%) Gaps:20/946 - (2%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 SNITAAVIA--NRNKKHFLGVPAPLGYVAGVGRGATGFTTRSDIGPARDANDVSDDRHAPPATK- 63
            |.:|||:..  |:.||.|||:|||||||.|:|||||||||||||||||||||..|||||||..: 
 Frog    23 SGLTAAITGTMNKKKKPFLGMPAPLGYVPGLGRGATGFTTRSDIGPARDANDPVDDRHAPPGKRT 87

  Fly    64 ---RKKKDEEEEEDEDLNDSNYDEFSGYSGSLFSKDPYDKDDEEADAIYDSIDKRMDEKRKEYRD 125
               :.||::.:::||||||:|||||:||:|||||..||:||||||||||.::||||||:|||.|:
 Frog    88 VGDQMKKNQADDDDEDLNDTNYDEFNGYAGSLFSSGPYEKDDEEADAIYAALDKRMDERRKERRE 152

  Fly   126 RRLREDLERYRQERPKIQQQFSDLKRSLASVTSEEWSTIPEVGDSRNRKQRNPRAEKFTPLPDSL 190
            :|.:|::|:||.||||||||||||||.||.||.|||.:||||||:||::|||||.||.||:|||.
 Frog   153 QREKEEIEKYRMERPKIQQQFSDLKRKLAEVTEEEWLSIPEVGDARNKRQRNPRHEKLTPVPDSF 217

  Fly   191 ISRNL-GGESSSTLDP------------SSGLASMVPGVATPGMLTP-TGDLDLRKIGQARNTLM 241
            .:::| .|:|.|::||            ..||.:..||..|||::|| |||||:|||||||||||
 Frog   218 FAKHLQTGDSHSSVDPRQTQFGGLNTPFPGGLNTPYPGGMTPGLMTPGTGDLDMRKIGQARNTLM 282

  Fly   242 NVKLSQVSDSVTGQTVVDPKGYLTDLQSMIPTYGGDINDIKKARLLLKSVRETNPNHPPAWIASA 306
            :::||||||||:||||||||||||||.|||||:||||||||||||||||||||||:|||||||||
 Frog   283 DMRLSQVSDSVSGQTVVDPKGYLTDLNSMIPTHGGDINDIKKARLLLKSVRETNPHHPPAWIASA 347

  Fly   307 RLEEVTGKVQMARNLIMRGCEMNIQSEDLWLEAARLQPPDTAKAVIAQAARHIPTSVRIWIKAAD 371
            ||||||||:|:||||||:|.||..:|||:|||||||||.||||||:|||.||:|.||||:|:||:
 Frog   348 RLEEVTGKLQVARNLIMKGTEMCPKSEDVWLEAARLQPGDTAKAVVAQAVRHLPQSVRIYIRAAE 412

  Fly   372 LESETKAKRRVFRKALEHIPNSVRLWKAAVELENPDDARILLSRAVECCNTSVELWLALARLETY 436
            ||::.:||:||.||||||:||||||||||||||.|:||||:||||||||.|:|||||||||||||
 Frog   413 LETDLRAKKRVLRKALEHVPNSVRLWKAAVELEEPEDARIMLSRAVECCPTNVELWLALARLETY 477

  Fly   437 ENARKVLNKARENIPTDRQIWTTAAKLEEANGNIHMVEKIIDRSLTSLTVNGVEINRDQWFQEAI 501
            ||||||||||||||||||.||.|||||||||||..||||||||::|||..|||||||:||.|:|.
 Frog   478 ENARKVLNKARENIPTDRHIWITAAKLEEANGNTQMVEKIIDRAITSLRANGVEINREQWIQDAE 542

  Fly   502 EAEKSGAVNCCQSIVKAVIGIGVEEEDRKQTWIDDAEFCAKENAFECARAVYAHALQIFPSKKSI 566
            |.:|:|:|..||:|:|.|||||:||||||.||::||:.|...:|.|||||:|||:||:||||||:
 Frog   543 ECDKAGSVATCQAIIKDVIGIGIEEEDRKHTWMEDADSCVAHSALECARAIYAHSLQVFPSKKSV 607

  Fly   567 WLRAAYFEKNHGTRESLEALLQRAVAHCPKSEILWLMGAKSKWMAGDVPAARGILSLAFQANPNS 631
            ||||||||||||||||||||||||||||||:|:||||||||||:||||||||.||:|||||||||
 Frog   608 WLRAAYFEKNHGTRESLEALLQRAVAHCPKAEVLWLMGAKSKWLAGDVPAARSILALAFQANPNS 672

  Fly   632 EDIWLAAVKLESENSEYERARRLLAKARGSAPTPRVMMKSARLEWALEKFDEALRLLEEAVEVFP 696
            |:||||||||||||:|||||||||||||.||||.||.|||.:|||.|...:.|..|.|||:..:.
 Frog   673 EEIWLAAVKLESENNEYERARRLLAKARSSAPTARVFMKSVKLEWVLGNIEAAQDLCEEALRHYE 737

  Fly   697 DFPKLWMMKGQIEEQQRRTDDAAATYTLGLKKCPTSIPLWILSANLEERKGVLTKARSILERGRL 761
            |||||||||||||||..:.:.|...|..|||||..|.|||:|.:.|||:.|.||:||:|||:.||
 Frog   738 DFPKLWMMKGQIEEQGEQIEKARDAYNQGLKKCLHSTPLWLLLSRLEEKVGQLTRARAILEKSRL 802

  Fly   762 RNPKVAVLWLEAIRVELRAGLKEIASTMMARALQECPNAGELWAEAIFMETKPQRKTKSVDALKK 826
            :|||...||||::|:|.|||||.||:|:||:|||||||:|.|||||:|:|.:|||||||||||||
 Frog   803 KNPKTPELWLESVRLEFRAGLKNIANTLMAKALQECPNSGILWAEAVFLEARPQRKTKSVDALKK 867

  Fly   827 CEHDPHVLLAVSKLFWSEHKFSKCRDWFNRTVKIDPDLGDAWAYFYKFELLHGTEAQQQEVLDRC 891
            |||||||||||:||||||.|.:|.|:||:||||||.|||||||.||||||.||||.||:|:..||
 Frog   868 CEHDPHVLLAVAKLFWSERKITKAREWFHRTVKIDSDLGDAWATFYKFELQHGTEEQQEEIRKRC 932

  Fly   892 ISAEPTHGESWCRVSKNIQNWQFKTPEVLRAVVREL 927
            .:|||.|||.||.|||:|:|||.|..|:|..|..::
 Frog   933 ENAEPRHGELWCAVSKDIKNWQQKIGEILVLVAAQI 968

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Prp6NP_649073.1 PRP1_N 22..173 CDD:461908 110/154 (71%)
PEP_TPR_lipo 236..>800 CDD:274350 429/563 (76%)
TPR repeat 393..419 CDD:276809 22/25 (88%)
TPR repeat 424..448 CDD:276809 23/23 (100%)
TPR repeat 454..481 CDD:276809 22/26 (85%)
LapB 610..861 CDD:442196 176/250 (70%)
TPR repeat 633..660 CDD:276809 24/26 (92%)
TPR repeat 698..728 CDD:276809 18/29 (62%)
TPR repeat 733..758 CDD:276809 14/24 (58%)
TPR repeat 767..795 CDD:276809 17/27 (63%)
prpf6NP_001025642.1 PRP1_N 45..200 CDD:461908 110/154 (71%)
PEP_TPR_lipo 321..>939 CDD:274350 466/617 (76%)
TPR repeat 436..459 CDD:276809 19/22 (86%)
TPR repeat 464..490 CDD:276809 24/25 (96%)
TPR repeat 495..522 CDD:276809 22/26 (85%)
LapB 661..930 CDD:442196 190/268 (71%)
TPR repeat 674..701 CDD:276809 24/26 (92%)
TPR repeat 739..769 CDD:276809 18/29 (62%)
TPR repeat 774..799 CDD:276809 14/24 (58%)

Return to query results.
Submit another query.