DRSC/TRiP Functional Genomics Resources

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Protein Alignment Prp6 and crn

DIOPT Version :10

Sequence 1:NP_649073.1 Gene:Prp6 / 40064 FlyBaseID:FBgn0036828 Length:931 Species:Drosophila melanogaster
Sequence 2:NP_477118.1 Gene:crn / 31208 FlyBaseID:FBgn0000377 Length:702 Species:Drosophila melanogaster


Alignment Length:645 Identity:133/645 - (20%)
Similarity:235/645 - (36%) Gaps:181/645 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly   255 QTVVDPKGYLTDLQSMIPTYGGDINDIKKARLLLKSVRETNPNHPPAWIASARLEEVTGKVQMAR 319
            |.:.||.......|....|:.   ::::|.|:::        :|   ||..|:.||...::|.||
  Fly    46 QKISDPAELADYQQRKRKTFE---DNLRKNRMVV--------SH---WIKYAQWEEQQQEIQRAR 96

  Fly   320 NLIMRGCEMNIQSEDLWLEAARLQPPDT----AKAVIAQAARHIPTSVRIWIKAADLE---SETK 377
            ::..|..:...::..|||:.|.::..:.    |:.:..:|...:|...:.|.|...:|   ....
  Fly    97 SIWERALDNEHRNVTLWLKYAEMEMKNKQVNHARNLWDRAVTIMPRVNQFWYKYTYMEEMLENVA 161

  Fly   378 AKRRVFRKALEHIPNSVRLWKAAVELENPDDARILLSRAVECCNTSVELWLALARLETYENAR-- 440
            ..|:||.:.:|        |:       |::                :.|      :||.|..  
  Fly   162 GARQVFERWME--------WQ-------PEE----------------QAW------QTYVNFELR 189

  Fly   441 -KVLNKARE------NIPTDRQIWTTAAKLEEANGNIHMVEKIIDRSLTSLTVNGVEINRDQWFQ 498
             |.:::|||      .:..|.:.|...|:.||::|.||...::.:|:        ||...|.:.:
  Fly   190 YKEIDRAREIYERFVYVHPDVKNWIKFARFEESHGFIHGSRRVFERA--------VEFFGDDYIE 246

  Fly   499 EAIEAEKSGAVNCCQSIVKAVIGIGVEEEDRKQTWIDDAEFCAKENAFECARAVYAHALQIFPSK 563
            |.:            .|..|....|.:|.||                   ||.:|.:||...|..
  Fly   247 ERL------------FIAFARFEEGQKEHDR-------------------ARIIYKYALDHLPKD 280

  Fly   564 KSIWLRAAY--FEKNHGTRESLEALL--------------------------------------- 587
            ::..|..||  .||.:|.|..:|.::                                       
  Fly   281 RTQELFKAYTKHEKKYGDRAGIEDVIVSKRKYQYEQEVAANPTNYDAWFDYLRLIEAEGDRDQIR 345

  Fly   588 ---QRAVAHCPKSE---------ILWLMGAKSKWM-AGDVPAARGILSLAFQANPNSE----DIW 635
               :||:::.|.:.         .||:..|..:.: |.|....|.|.....:..|:.:    .:|
  Fly   346 ETYERAISNVPPANEKNFWRRYIYLWINYALYEELEAEDAERTRQIYKTCLELIPHKQFTFSKLW 410

  Fly   636 LAAVKLESENSEYERARRLLAKARGSAPTPRVMMKSARLEWALEKFDEALRLLEEAVEVFPDFPK 700
            |...:.|....|.:|||:.|..|.|..|..::......||..|.:|:....|.|:.:|..|:...
  Fly   411 LLYAQFEIRCKELQRARKALGLAIGMCPRDKLFRGYIDLEIQLREFERCRMLYEKFLEFGPENCV 475

  Fly   701 LWMMKGQIEEQQRRTDDAAATYTLGLKKCPTSIP--LWILSANLEERKGVLTKARSILERGRLRN 763
            .||...::|.....||.|.|.:.|.:::....:|  ||....:.|...|....||.:.||...|.
  Fly   476 TWMKFAELENLLGDTDRARAIFELAVQQPRLDMPELLWKAYIDFEVALGETELARQLYERLLERT 540

  Fly   764 PKVAVLWLEAIRVELRAGLK------------EIASTMMARALQECPNAGELWAEAIFME 811
            ..|.| |:...:.|:  ||.            ::|..:..||.:.....|:..:..:.:|
  Fly   541 QHVKV-WMSFAKFEM--GLSHGDSGPDAELNVQLARRIYERANEMLRQLGDKESRVLLLE 597

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Prp6NP_649073.1 PRP1_N 22..173 CDD:461908
PEP_TPR_lipo 236..>800 CDD:274350 131/632 (21%)
TPR repeat 393..419 CDD:276809 2/25 (8%)
TPR repeat 424..448 CDD:276809 6/26 (23%)
TPR repeat 454..481 CDD:276809 8/26 (31%)
LapB 610..861 CDD:442196 53/221 (24%)
TPR repeat 633..660 CDD:276809 9/26 (35%)
TPR repeat 698..728 CDD:276809 8/29 (28%)
TPR repeat 733..758 CDD:276809 7/26 (27%)
TPR repeat 767..795 CDD:276809 8/39 (21%)
crnNP_477118.1 LapB <94..202 CDD:442196 27/144 (19%)
TPR repeat 109..139 CDD:276809 6/29 (21%)
TPR repeat 144..172 CDD:276809 6/27 (22%)
RNA14 <180..539 CDD:227438 88/403 (22%)
HAT 191..222 CDD:111114 8/30 (27%)
TPR repeat 473..503 CDD:276809 8/29 (28%)
TPR repeat 508..538 CDD:276809 9/29 (31%)
Blue background indicates that the domain is not in the aligned region.

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