DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG3902 and Gcdh

DIOPT Version :10

Sequence 1:NP_649069.2 Gene:CG3902 / 40059 FlyBaseID:FBgn0036824 Length:414 Species:Drosophila melanogaster
Sequence 2:XP_063134240.1 Gene:Gcdh / 364975 RGDID:1308829 Length:472 Species:Rattus norvegicus


Alignment Length:415 Identity:118/415 - (28%)
Similarity:206/415 - (49%) Gaps:46/415 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 KLPVRMLANAARQQSAAMSSATGLPP------PLTF---LTDDEKMMKETVAKLAQEQIQPLVKK 62
            ::|....:.||..:...:.|.....|      ||..   ||.|||::::|.....||::...:..
  Rat    30 RVPRTWSSAAAHTEKTQIRSVKSSRPVFDWKDPLVLEEQLTADEKLIRDTFRNYCQERLMSRILL 94

  Fly    63 MDFEHKFDPSVVKAVFENGLMGIEIDTELGGSGCNFMTNI---VVVEELSKIDPAVAAFVDIHNT 124
            .:....|...:|..:.|.|::|..|.    |.||..::::   ::..||.::|....:.:.:.::
  Rat    95 ANRNEVFHRDIVYEMGELGVLGPTIK----GYGCAGVSSVAYGLLTRELERVDSGYRSMMSVQSS 155

  Fly   125 LVNSLMIKFGNAEQKAKYLPKLAQ-EYAGSFALTEPGAGSDAFSLKTVAKKDGSH--YVINGSKM 186
            ||...:..:|:.||:.||||:||: |..|.|.||||..|||..|::|.|:.:.|:  |.::|:|.
  Rat   156 LVMHPIYTYGSEEQRQKYLPRLAKGELLGCFGLTEPNHGSDPGSMETRARHNPSNKSYTLSGTKT 220

  Fly   187 WISNSDVAGVFLIFANAKPEDGYRGITTFIVDRETPGLIVNKPEDKLGIRASGTCQLTFDNVRVP 251
            ||:||.||.:|:::|..: ::..||   |::::...||...:.|.|..:|||.|..:..|:|.||
  Rat   221 WITNSPVADLFVVWARCE-DNCIRG---FLLEKGMRGLSAPRIEGKFSLRASATGMIIMDSVEVP 281

  Fly   252 EENIL-------GTFGHGYKYAAGFLNEGRIGIAAQMVGLAQGTFDATIPYLLERKQFGDAIYNF 309
            |||:|       |.|        |.||..|.||...::|.|:........|.|:|.|||..:...
  Rat   282 EENVLPNVSSLAGPF--------GCLNTARYGITWGVLGAAEFCLHTARQYALDRIQFGVPLARN 338

  Fly   310 QSMQHQIATVATEIEAARLMTYNAARLQEQGVPFQKEAAMAKY----YASEVAQRAAIKCVDWMG 370
            |.:|.::|.:.|||...........||::|.....:..::.|.    .|.::|::|.    |.:|
  Rat   339 QLVQKKLADMLTEITLGLHACLQLGRLKDQDKATPEMVSLLKRNNCGKALDIARQAR----DILG 399

  Fly   371 GVGFTRDFPQEKYYRDVKIGAIYEG 395
            |.|.:.::...::..:::....|||
  Rat   400 GNGISDEYHVIRHAMNLEAVNTYEG 424

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG3902NP_649069.2 SCAD_SBCAD 39..410 CDD:173847 109/374 (29%)
GcdhXP_063134240.1 None

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