DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG3902 and Gcdh

DIOPT Version :9

Sequence 1:NP_649069.2 Gene:CG3902 / 40059 FlyBaseID:FBgn0036824 Length:414 Species:Drosophila melanogaster
Sequence 2:NP_001038209.2 Gene:Gcdh / 270076 MGIID:104541 Length:447 Species:Mus musculus


Alignment Length:457 Identity:127/457 - (27%)
Similarity:217/457 - (47%) Gaps:74/457 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 SLKKLPVRMLANAAR----------QQSAAMSSATGLPP------------PLTF---LTDDEKM 43
            ||:.:..|:|:..:.          ..:||.:..|.:.|            ||..   ||.|||:
Mouse    11 SLRGVSARLLSRRSGLRFPRFPRTWSSAAAHTEKTQIRPAKSSRPVFDWKDPLILEEQLTADEKL 75

  Fly    44 MKETVAKLAQEQIQPLVKKMDFEHKFDPSVVKAVFENGLMGIEIDTELGGSGCNFMTNI---VVV 105
            :::|.....||::...:...:....|...:|..:.|.|::|..|.    |.||..::::   ::.
Mouse    76 IRDTFRNYCQERLMSRILLANRNEVFHRDIVYEMGELGVLGPTIK----GYGCAGVSSVAYGLLT 136

  Fly   106 EELSKIDPAVAAFVDIHNTLVNSLMIKFGNAEQKAKYLPKLAQ-EYAGSFALTEPGAGSDAFSLK 169
            .||.::|....:.:.:.::||...:..:|:.||:.||||.||: |..|.|.||||..|||...::
Mouse   137 RELERVDSGYRSMMSVQSSLVMHPIYTYGSEEQRQKYLPGLAKGELLGCFGLTEPNHGSDPGGME 201

  Fly   170 TVAKKDGSH--YVINGSKMWISNSDVAGVFLIFANAKPEDGYRGITTFIVDRETPGLIVNKPEDK 232
            |.|:.:.|:  |.::|:|.||:||.||.:|:::|..: ::..||   ||:::...||...:.|.|
Mouse   202 TRARHNPSNQSYTLSGTKTWITNSPVADLFIVWARCE-DNCIRG---FILEKGMRGLSAPRIEGK 262

  Fly   233 LGIRASGTCQLTFDNVRVPEENIL-------GTFGHGYKYAAGFLNEGRIGIAAQMVGLAQGTFD 290
            ..:|||.|..:..|:|.|||||:|       |.|        |.||..|.||...::|.|:....
Mouse   263 FSLRASATGMIIMDSVEVPEENVLPNVSSLAGPF--------GCLNTARYGITWGVLGAAEFCLH 319

  Fly   291 ATIPYLLERKQFGDAIYNFQSMQHQIATVATEIEAARLMTYNAARLQEQGVPFQKEAAMAKY--- 352
            ....|.|:|.|||..:...|.:|.::|.:.|||...........||::|.....:..:|.|.   
Mouse   320 TARQYALDRIQFGVPLARNQLVQKKLADMLTEITLGLHACLQLGRLKDQDKATPEMVSMLKRNNC 384

  Fly   353 -YASEVAQRAAIKCVDWMGGVGFTRDFPQEKYYRDVKIGAIYEGT------------TNMQLSTI 404
             .|.::|::|.    |.:||.|.:.::...::..:::....||||            |.:|..|:
Mouse   385 GKALDIARQAR----DILGGNGISDEYHVIRHAMNLEAVNTYEGTHDIHALILGRAITGIQAFTV 445

  Fly   405 AK 406
            .|
Mouse   446 GK 447

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG3902NP_649069.2 CaiA 37..414 CDD:224871 117/399 (29%)
SCAD_SBCAD 39..410 CDD:173847 115/397 (29%)
GcdhNP_001038209.2 GCD 57..443 CDD:173840 117/405 (29%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG1960
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D589058at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
43.820

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