Protein Alignment Polr3D and AT5G09380

DIOPT Version :10

• Sequence 1: NP_649028.3
• Gene: Polr3D / 40002
• FlyBaseID: FBgn0036775
• Length: 415
• Species: Drosophila melanogaster
• Sequence 2: NP_001332087.1
• Gene: AT5G09380 / 830797
• AraportID: AT5G09380
• Length: 272
• Species: Arabidopsis thaliana
• Alignment Length: 261
• Identity: 72/261 - (27%)
• Similarity: 108/261 - (41%)
• Gaps: 65/261 - (24%)

  Fly   151 EVSVTRKRVDRKDDKSQ---------AERIKELLGESDASGGELSEEEANKTE----MALRPILL 202
            |.|:.:.:.|:|...||         :.|..:.|..|:.:.|..|.:|....|    .:..||.|
plant    49 ERSLRKPKADKKVPASQVAWLGGVVNSTRSNKYLNRSNGAYGSTSTQEIEYKEPWDYYSYYPITL 113

  Fly   203 KEGLWVTQKTPIA-KQEIASSTSTLKDTLAVAQHLQQLHVAAQAASLEEPPLQYGRYPRTIGNFL 266
                  ..:.|.| ..|:......::   |...|...|:.||....:|
plant   114 ------PMRRPYAGDPEVLDVEEFMQ---AGGHHEDSLNTAANLGLME----------------- 152

  Fly   267 DSSEAQIFLMQLPDVLPCVGDDSEDPE--PS-KGDHQATSESEPASPADKCSNGPKGSVLRQLEE 328
            ||.|.::|.|:||.| |.....:|:.|  |: ||            |.:|     |...|:.|.|
plant   153 DSGEQKMFFMRLPSV-PLASTPTENLETRPNIKG------------PVEK-----KTVDLKALPE 199

  Fly   329 GQIGKILRYKSGRVKLQLGDTRFDLDMGLDPGFLQELMSVTANREQRSGNMINLGPIQAKLKATP 393
            |.:||:|.||||.||::||:..:|:..||...|.|::|.|  |.||:  |...:|.:......||
plant   200 GYMGKLLVYKSGAVKMKLGEVLYDVSPGLKSEFAQDVMVV--NTEQK--NCCLVGDVYKHAVLTP 260

  Fly   394 D 394
            |
plant   261 D 261

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Polr3D	NP_649028.3	RNA_pol_Rpc4	270..395	CDD:461558	45/128 (35%)
AT5G09380	NP_001332087.1	RNA_pol_Rpc4	156..262	CDD:461558	45/128 (35%)