Protein Alignment Polr3D and AT4G25180

DIOPT Version :10

• Sequence 1: NP_649028.3
• Gene: Polr3D / 40002
• FlyBaseID: FBgn0036775
• Length: 415
• Species: Drosophila melanogaster
• Sequence 2: NP_194248.2
• Gene: AT4G25180 / 828621
• AraportID: AT4G25180
• Length: 311
• Species: Arabidopsis thaliana
• Alignment Length: 302
• Identity: 62/302 - (20%)
• Similarity: 110/302 - (36%)
• Gaps: 94/302 - (31%)

  Fly   153 SVTRKRVDRKDDKSQAERIKELLGESDASGGELSEEEANKTEMALRPILLKEGLWVTQKTPIAKQ 217
            |.|....|.::.|:..:..:.::|....     :|.:|:..|:|.:|.|          :|:|.:
plant    29 SNTEAEEDEENIKASRQFDRRIVGRRPK-----TETKASSPEVAFQPSL----------SPLAIR 78

  Fly   218 EI------------------ASSTSTLKDTLAVAQHLQQLH--VAAQAASLEEP----------- 251
            ..                  ||....:....|..:..:::|  |........||
plant    79 SFGVPKEDDKPNSDVNPSSPASILPAVSSVTAAQEDGEEVHNFVTRTGDDYVEPWDYRNSYYPTV 143

  Fly   252 -PL--------------QYGRYPR-------TIGN-------FLDSSEAQIFLMQLPDVLPCVGD 287
             ||              ::|...:       ||.:       .:..|:.|:|:.::||.||.|
plant   144 LPLRKPNSGDIELLDQEEFGEVAKNRDYDENTINSAEELGLTSVQHSKKQMFIFKIPDCLPVV-- 206

  Fly   288 DSEDPEPSKGDHQATSESEPASPADKCSNGPKGSVLRQLEEGQIGKILRYKSGRVKLQLGDTRFD 352
                    |....||::......:...||..:|     |.||.:||:|.||||.|||::||..||
plant   207 --------KQTTGATTKRSVREYSSGISNPFEG-----LPEGFMGKMLVYKSGAVKLKVGDALFD 258

  Fly   353 LDMGLDPGFLQELMSVTANREQRSGNMINLGPIQAKLKATPD 394
            :..|.......:::::    :.:..|...:|.....:..|||
plant   259 VSPGPGTKIPNDVVAI----DIKGRNCSRIGSSAKFVTVTPD 296

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Polr3D	NP_649028.3	RNA_pol_Rpc4	270..395	CDD:461558	36/125 (29%)
AT4G25180	NP_194248.2	RNA_pol_Rpc4	193..297	CDD:461558	36/123 (29%)