Protein Alignment Polr3D and Polr3d

DIOPT Version :10

• Sequence 1: NP_649028.3
• Gene: Polr3D / 40002
• FlyBaseID: FBgn0036775
• Length: 415
• Species: Drosophila melanogaster
• Sequence 2: NP_080221.3
• Gene: Polr3d / 67065
• MGIID: 1914315
• Length: 398
• Species: Mus musculus
• Alignment Length: 446
• Identity: 111/446 - (24%)
• Similarity: 178/446 - (39%)
• Gaps: 113/446 - (25%)

  Fly    19 ASGSTTNNGQSGGGARPLETLNG---------MTRLTP-------ARDLTLGGRGAGTASKKVFA 67
            :.|:......:.||.|||  |:|         ...|||       :|||||||     ..||.|.
Mouse     2 SEGNAAGEPSNPGGPRPL--LSGGRGLIGRRPAPPLTPGRLPSIRSRDLTLGG-----VKKKTFT 59

  Fly    68 PNLNAVRNKNANVKTSKDTTQPRSGRRGGRGNGTGATRGRGGNSAGGGNSTLIQTQGLFSEGAGD 132
            ||:.:.:.|.   :..::.|..:..|...|      .|.|.|:..|.|...:||:..:|.:|..:
Mouse    60 PNIISRKIKE---EPKEEVTMKKEKRERDR------DRQREGHGRGRGRPEVIQSHSIFEQGPAE 115

  Fly   133 VHVRRSTGNGTA-YARGGEEVSVTRKRVDRKDDKSQAERIKELLGESD----------------- 179
            :..::...:.|. .:..|....:..|:..|:.|: :.::|..:|.:.|
Mouse   116 MMKKKGNWDKTVDMSDMGPSHIINIKKEKRETDE-ETKQILRMLEKDDFIDDPGLKNDTRNMPVQ 179

  Fly   180 ---ASGGELSEEEANKTEMALRPILL---KEGLWVTQKTPIAKQE---------------IASST 223
               |..|.|.:||:.:.|  .:|...   :|.:.|.......|:|               .|..|
Mouse   180 LPLAHSGWLFKEESEEPE--AKPFSAGPKEEDMEVDVPAVKVKEEPRDEEEEAKVKAPPRAARKT 242

  Fly   224 STLKDTLAVAQHLQQLHVAAQAASLEEPPLQYGRYPRTIGNFLDSSEAQIFLMQLPDVLPCVGD- 287
            ..|...::||:.|::|.:                          ..:.::..:||||.||  |.
Mouse   243 PGLPKDVSVAELLRELSL--------------------------MKDEELLFLQLPDTLP--GQP 279

  Fly   288 DSEDPEPSKGDHQATS------ESEPASPADKCSNGPKGSVLRQLEEGQIGKILRYKSGRVKLQL 346
            .::|.:|.|.:.|...      :.|....|....|   ...|..|.|||:||:|..|||:|:|.|
Mouse   280 PTQDIKPVKTEVQGEDGQMVVIKQEKDREARLAEN---ACTLADLTEGQVGKLLIRKSGKVQLLL 341

  Fly   347 GDTRFDLDMGLDPGFLQELMSVTANREQRSGNMINLGPIQAKLKATPDWVHLFQQQ 402
            |....|:.||....|||||:||... :.|:|.|..||.::.||..:||:..|...:
Mouse   342 GKVTLDVTMGTTCSFLQELVSVGLG-DSRTGEMTVLGHVKHKLVCSPDFESLLDHK 396

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Polr3D	NP_649028.3	RNA_pol_Rpc4	270..395	CDD:461558	47/131 (36%)
Polr3d	NP_080221.3	Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite	1..149		40/162 (25%)
		Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite	191..244		10/54 (19%)
		RNA_pol_Rpc4	263..389	CDD:461558	47/131 (36%)