DRSC/TRiP Functional Genomics Resources

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Protein Alignment Polr3D and polr3d

DIOPT Version :10

Sequence 1:NP_649028.3 Gene:Polr3D / 40002 FlyBaseID:FBgn0036775 Length:415 Species:Drosophila melanogaster
Sequence 2:NP_956581.1 Gene:polr3d / 393257 ZFINID:ZDB-GENE-040426-1017 Length:381 Species:Danio rerio


Alignment Length:428 Identity:115/428 - (26%)
Similarity:179/428 - (41%) Gaps:96/428 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly    17 SGASGSTTNNGQSGGGAR-PLETLNGMTRLTPARDLTLGGRGAGTASKKVFAPNLNAVRNKNANV 80
            |.|...|.|.|....|.| |.....|......:|||||||     ..||.|.||:...::|.   
Zfish     7 SRAPPRTPNVGGLPMGRRLPSSISAGRLPAMRSRDLTLGG-----VKKKTFTPNIIGRKSKE--- 63

  Fly    81 KTSKDTTQPRSGRRGGRGNGTGATRGRGGNSAGGGNSTLIQTQGLFSEGAGDVHVRR----STGN 141
            :...|..:.|..|...||      |.|.|...|.|...:||:..:|.:|..|...:|    ....
Zfish    64 ELKVDEEKRRDKRDVDRG------RQRDGRGRGRGRPEVIQSHSIFEQGPADTMAKRRGVYDDAR 122

  Fly   142 GTAYARGGEEVSVTRKRVDRKDDKSQAERIKE--------LLGESDA---------SG----GEL 185
            .||.:.....:::.::|...::.|....::::        |.||..:         ||    ||.
Zfish   123 ETANSGPTPIINIKKERETEEETKEILRKLEKDNFLDDPHLRGERGSCPVQLPLAVSGWVFKGEF 187

  Fly   186 SEEEANKTEMALRPILLKEGLWVTQKTPIAKQEIASSTSTLKDTLAVAQHLQQLHVAAQAASLEE 250
            |||                     .|:|...|.|::..:.:|        ::|..:........|
Zfish   188 SEE---------------------SKSPSDPQPISTDGTGVK--------VKQEPLDVPEPKKVE 223

  Fly   251 PPLQYGRYPRT--IGNFLD----SSEAQIFLMQLPDVLPCVGD-DSEDPEPSKGDHQAT------ 302
            |..:....|:.  :.:.|:    ..|.::..|||||.||  |. .:.|..|:|.:.|::      
Zfish   224 PAFKLPPMPKADLLPDLLEVWNHCKEEELLFMQLPDSLP--GQPPTSDVRPTKTEVQSSDGQTMM 286

  Fly   303 --SESEPASPADK-CSNGPKGSVLRQLEEGQIGKILRYKSGRVKLQLGDTRFDLDMGLDPGFLQE 364
              :|::..||.:. |       .|:.|:||.:||:|..|||||:|.||:...|:.:|....||||
Zfish   287 QKTETQEESPEENTC-------CLKDLQEGLVGKMLVRKSGRVQLVLGNVTLDVALGTPCAFLQE 344

  Fly   365 LMSVTANREQRSGNMINLGPIQAKLKATPDWVHLFQQQ 402
            |:||  |.|.|.|:|..||.::.||..:||:..|.:.:
Zfish   345 LVSV--NTEGRRGDMSVLGHVKHKLVCSPDFQALLENR 380

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Polr3DNP_649028.3 RNA_pol_Rpc4 270..395 CDD:461558 51/134 (38%)
polr3dNP_956581.1 RNA_pol_Rpc4 249..373 CDD:461558 51/134 (38%)

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