DRSC/TRiP Functional Genomics Resources

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Protein Alignment Polr3D and RpIIIC53

DIOPT Version :10

Sequence 1:NP_649028.3 Gene:Polr3D / 40002 FlyBaseID:FBgn0036775 Length:415 Species:Drosophila melanogaster
Sequence 2:XP_562238.5 Gene:RpIIIC53 / 3291022 VectorBaseID:AGAMI1_013499 Length:357 Species:Anopheles gambiae


Alignment Length:404 Identity:139/404 - (34%)
Similarity:199/404 - (49%) Gaps:94/404 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly    23 TTNNGQSGGGARPLETLNGMTRLTP---ARDLTLGGRGAGTA---SKKVFAPNLNAVRNKNANVK 81
            |..|...|..|.|:|......||..   .||||| ..|..|.   :|||:.||||||||||.:||
Mosquito    19 TKGNNIIGNVAVPMEATVKPERLQSFRVPRDLTL-ANGRTTKPPNNKKVYTPNLNAVRNKNTDVK 82

  Fly    82 TSKDTTQPRSGRRGGRGNGTGATRGRGGNSAGGGN--STLIQTQGLFSEGAGD---VHVRRSTGN 141
            |:  :|.|:     ||     |...|..|...|.|  :|||||.|:||:|...   :...||..:
Mosquito    83 TA--STGPK-----GR-----AKTDRNRNDKDGRNKKNTLIQTSGIFSDGLAQRALLRTSRSDKS 135

  Fly   142 GTA-----------YARGGEEVSVTRKRVDRKDDKSQAERIKELLGESDASGGELSEEEANKTEM 195
            .::           :|||.       .::|.:|::   :||:.|..:.|....||.::.||..::
Mosquito   136 SSSKEPGDSIQKPVFARGS-------SKIDLEDER---KRIQNLCEDMDEEMAELDQKMANGLKL 190

  Fly   196 ALRPILLKEGLWVTQKTPIAKQEIASSTSTLKDTLAVAQHLQQLHVAAQAASLEEPPLQYGRYPR 260
               |::|:...:.. |.|..|.|                            :|.|..|...   .
Mosquito   191 ---PVVLENSDYKI-KPPEVKME----------------------------NLPETKLDSF---N 220

  Fly   261 TIGNFLDSSEA-QIFLMQLPDVLPCVGDDSEDPEPSKGDHQATSESEPASPADKCSNG---PKGS 321
            ::.|.|...:. :|||:||||.||...||. :..|:.||     :|:|.:.|    ||   ||..
Mosquito   221 SVENVLSGEQTNKIFLLQLPDALPGKSDDG-NKRPTNGD-----DSKPEATA----NGEETPKYC 275

  Fly   322 VLRQLEEGQIGKILRYKSGRVKLQLGDTRFDLDMGLDPGFLQELMSVTANREQRSGNMINLGPIQ 386
            .:|.|.||.||||:||:||:|||:||:..||:.:|:|.||||||:|:..|..:|:||:||:..|.
Mosquito   276 TVRDLAEGYIGKIIRYRSGKVKLKLGEIMFDISVGMDTGFLQELVSINTNSVERNGNIINISTIN 340

  Fly   387 AKLKATPDWVHLFQ 400
            .||.|:|||.:||:
Mosquito   341 TKLNASPDWEYLFK 354

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Polr3DNP_649028.3 RNA_pol_Rpc4 270..395 CDD:461558 60/128 (47%)
RpIIIC53XP_562238.5 None

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