DRSC/TRiP Functional Genomics Resources

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Protein Alignment: Vps60 and Vps20

Sequence 1:NP_001261994.1 Gene:Vps60 FlyBaseID:FBgn0036740 Length:226 Species:Drosophila melanogaster
Sequence 2:NP_611686.2 Gene:Vps20 FlyBaseID:FBgn0034744 Length:212 Species:Drosophila melanogaster

Alignment Length:239 Identity:57/240 (24%)
Similarity:106/240 (44%) Gaps:47/240 (20%)


  Fly     1 MNRLFGRGKPKEPGPSLNDCIAGVDARATNIEEKISNLEAE---LRKYREQMSKMREGP---AKN 59
            |..|||: ..|:..||          |.|:.::.:..|:.:   |::|::::....|..   |:.
  Fly     1 MGALFGK-TSKKTAPS----------RITDQDKAVLQLKQQRDRLKQYQKRIETQLENDRLLARK 54

  Fly    60 SVKQ---KALRVLKQKKAYEQQAESLRNQSFNMEQANYAAQSLKDTQATVAAMKDGVK----QMK 117
            .::|   ...::|.:||.|::..  |.|....:|.....|..::..|..:..: ||:|    .:|
  Fly    55 CLQQGRKDRAKLLLRKKKYQESL--LTNADKQLENLEKLAADIEFAQVEMKVL-DGLKAGNAALK 116

  Fly   118 TEYKKINIDQIEDIQDDMADMFEQADEVQEALGRTYGMPEVDDDDLQAELDALGDEIALDDDTSY 182
            ..::.::||::|.|.|:..:..|:..|:...|  |..:...|::|:.||||||..|         
  Fly   117 KVHEMLDIDEVERIMDETREGIEKQQEIDAIL--TDVLTTQDEEDVLAELDALEAE--------- 170

  Fly   183 LDDVVKAPEAPSREPGADSIVPGKSTIETDEFGLPKIPTSLKTT 226
             ::..|..:.|. .|..|..:|.:  ||:.|     .|...|.|
  Fly   171 -EEQQKGAQLPD-VPTEDLPIPAE--IESVE-----EPAKTKAT 205

Known Domains:


GeneSequenceDomainRegion External IDIdentity
Vps60NP_001261994.1 Snf7 1..190 CDD:304451 47/202 (23%)
Vps20NP_611686.2 Snf7 22..186 CDD:281366 40/180 (22%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 P PTHR22761
RoundUp 00.000 Not matched by this tool.
11.100

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