DRSC/TRiP Functional Genomics Resources

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Protein Alignment: Vps60 and Chmp5

Sequence 1:NP_001261994.1 Gene:Vps60 FlyBaseID:FBgn0036740 Length:226 Species:Drosophila melanogaster
Sequence 2:NP_001020581.1 Gene:Chmp5 RGDID:1305968 Length:219 Species:Rattus norvegicus

Alignment Length:222 Identity:140/223 (63%)
Similarity:171/223 (77%) Gaps:3/223 (1%)


  Fly     1 MNRLFGRGKPKEPGPSLNDCIAGVDARATNIEEKISNLEAELRKYREQMSKMREGPAKNSVKQKA 65
            |||.||:.|||.|.|||.|||..||:||.:|::|||.|:|||.||::|:.|||||||||.|||||
  Rat     1 MNRFFGKAKPKAPPPSLTDCIGTVDSRAESIDKKISRLDAELVKYKDQIKKMREGPAKNMVKQKA 65

  Fly    66 LRVLKQKKAYEQQAESLRNQSFNMEQANYAAQSLKDTQATVAAMKDGVKQMKTEYKKINIDQIED 130
            |||||||:.||||.::|..||||||||||..||||||:.||.|||.|||:||..||::.||||||
  Rat    66 LRVLKQKRMYEQQRDNLAQQSFNMEQANYTIQSLKDTKTTVDAMKLGVKEMKKAYKEVKIDQIED 130

  Fly   131 IQDDMADMFEQADEVQEALGRTYGMPEVDDDDLQAELDALGDEIALDDDTSYLDDVVKAPEAPSR 195
            :||.:.||.|.|:|:||||||:||.||:|:|||:|||||||||:..|:|:||||:...||..|. 
  Rat   131 LQDQLEDMMEDANEIQEALGRSYGTPELDEDDLEAELDALGDELLADEDSSYLDEAASAPAIPE- 194

  Fly   196 EPGADSIVPGKSTIETDEFGLPKIPTS 222
              |..:....|..:..||||||:||.|
  Rat   195 --GVPTDTKNKDGVLVDEFGLPQIPAS 219

Known Domains:


GeneSequenceDomainRegion External IDIdentity
Vps60NP_001261994.1 Snf7 1..190 CDD:304451 127/189 (67%)
Chmp5NP_001020581.1 Snf7 1..201 CDD:328813 130/203 (64%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 C273815202
eggNOG 1 0.900 E1_KOG1655
Hieranoid 1 1.000
Homologene 1 1.000 H5757
Inparanoid 1 1.050 284 1.000 Inparanoid score I2738
OMA 1 1.010
OrthoDB 1 1.010 D1301560at2759
OrthoFinder 1 1.000 FOG0003082
OrthoInspector 1 1.000 T1088617
orthoMCL 1 0.900 OOG5_128328
Panther 1 1.100 LDO PTHR22761
Phylome 1 0.910 0.667 Consistency score
TreeFam 1 0.960
1312.770

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