DRSC/TRiP Functional Genomics Resources

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Protein Alignment: sinah and TRAF4

Sequence 1:NP_648927.1 Gene:sinah FlyBaseID:FBgn0259794 Length:351 Species:Drosophila melanogaster
Sequence 2:XP_011523806.1 Gene:TRAF4 HGNCID:12034 Length:477 Species:Homo sapiens

Alignment Length:129 Identity:32/130 (25%)
Similarity:49/130 (38%) Gaps:37/130 (28%)


  Fly   104 LECPVCFGYIMPPIMQCPRGHLICSTCRSKLTICPVCRVFMTNIRSLAMEKVASKLIFPCKHSHF 168
            |.||:|...:..|:.....||..|.||                     :::..|:.:|.|...  
Human    16 LLCPLCGKPMREPVQVSTCGHRFCDTC---------------------LQEFLSEGVFKCPED-- 57

  Fly   169 GCRARLSYAEKTKH-------EEDCECR----PYFCPYPDDKCSWQGPLRDVYQHLMSSHENVI 221
              :..|.|| |..|       :.:.|.:    |..|.:.::.|.|.||||.:..||.:...|||
Human    58 --QLPLDYA-KFPHPYPQIYPDPELEVQVLGLPIRCIHSEEGCRWSGPLRHLQGHLNTCSFNVI 118

Known Domains:


GeneSequenceDomainRegion External IDIdentity
sinahNP_648927.1 zf-C3HC4 106..140 CDD:278524 9/34 (26%)
Sina 147..341 CDD:281181 22/87 (25%)
TRAF4XP_011523806.1 RING 18..55 CDD:238093 12/58 (21%)
zf-TRAF 109..163 CDD:280357 5/11 (45%)
zf-TRAF 217..276 CDD:280357
MATH_TRAF4 315..470 CDD:239750
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 0.667 Consistency score
RoundUp 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
10.910

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