DRSC/TRiP Functional Genomics Resources

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Protein Alignment UQCR-C2 and SDD3

DIOPT Version :10

Sequence 1:NP_648905.1 Gene:UQCR-C2 / 39846 FlyBaseID:FBgn0250814 Length:440 Species:Drosophila melanogaster
Sequence 2:NP_014543.1 Gene:SDD3 / 854055 SGDID:S000005458 Length:1037 Species:Saccharomyces cerevisiae


Alignment Length:249 Identity:52/249 - (20%)
Similarity:78/249 - (31%) Gaps:85/249 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly    65 NESYDIQGASHLLRLAGGLSTQNSTAFAIARNIQQVGGTLTTWGDRELVGYTVTTTADNAETGL- 128
            ::||..:|   ||..||.||..|:.|                |.|.:...||:::......:.| 
Yeast    70 SKSYPYKG---LLDTAGNLSLSNTNA----------------WTDTDQTVYTLSSAGWKGFSKLL 115

  Fly   129 -RYLQDLLQPA------------FKPWELVDNAKTVVNQLNAVST--------EERAIELVHKAA 172
             .||..:|.|.            ..|..|.|.. .|.:::.|:.|        |::.:.....:.
Yeast   116 PAYLDHILHPTLTDEACLTEVYHIDPENLGDKG-VVFSEMEAIETQGWYISGLEKQRLMFPEGSG 179

  Fly   173 FRNGLGNSIYSPR---------FQLGKLSSESLLHYVAQTFAAGRAAVVGVGIDN---------- 218
            :|:..|....:.|         |.....||::|...|...........|....||          
Yeast   180 YRSETGGLTKNLRTLTNDEIRQFHKSLYSSDNLCVIVCGNVPTDELLTVMEEWDNKLPEIPSNIP 244

  Fly   219 -------NTLAGFAQ--------TLQFP----SGGSKAASANWYG---GDARKD 250
                   |.|:...|        |::||    |.|....|  |.|   .|.|.|
Yeast   245 KKRPFLDNKLSHIPQSRDKVTESTVEFPELDESQGELLFS--WIGVPYSDFRND 296

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
UQCR-C2NP_648905.1 PqqL 23..428 CDD:440377 52/249 (21%)
SDD3NP_014543.1 PqqL 29..458 CDD:440377 52/249 (21%)
PqqL <743..996 CDD:440377
Blue background indicates that the domain is not in the aligned region.

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