DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rpn12 and Psmd8

DIOPT Version :10

Sequence 1:NP_648904.1 Gene:Rpn12 / 39845 FlyBaseID:FBgn0028693 Length:264 Species:Drosophila melanogaster
Sequence 2:NP_080821.3 Gene:Psmd8 / 57296 MGIID:1888669 Length:353 Species:Mus musculus


Alignment Length:259 Identity:130/259 - (50%)
Similarity:186/259 - (71%) Gaps:3/259 - (1%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 LYKELTAEWSKRPPNTVKCGQLLDQLKVALVKMAFLPTDGNDAQSSKKQLILARSVLEVAVEHSV 71
            :|::|..||:::.||..|||:.|.:||:.|:::.||||.|  .:.:|:||||||.:||:..:.|:
Mouse    97 MYEQLKDEWNRKNPNLSKCGEELGRLKLVLLELNFLPTTG--TKLTKQQLILARDILEIGAQWSI 159

  Fly    72 LSKDLLAFERYMAQLKCYYYDYAKIIGESESKYKLLGLNLLYLLSGNRVSDFHTELELLSVDVIQ 136
            |.||:.:||||||||||||:||.:.:.||...::|||||||:|||.|||::||||||.|....||
Mouse   160 LCKDIPSFERYMAQLKCYYFDYKEQLPESAYMHQLLGLNLLFLLSQNRVAEFHTELERLPAKDIQ 224

  Fly   137 HNQFIRPILALEQYIMEGRYNKIFQAKSTVPVEVYSYFMDLLLETVRDEIGACIEKSYDKISAKD 201
            .|.:|:..::||||:|||.|||:|.||..:|.|.|::|:|:||:|:||||..||||:|:||...:
Mouse   225 TNVYIKHPVSLEQYLMEGSYNKVFLAKGNIPAESYTFFIDILLDTIRDEIAGCIEKAYEKILFAE 289

  Fly   202 AAKRLNLRVPDEIKAFGAKRQWKLEASGDYSFTDRSVKPKE-LLPSEELAEQVLSYARDLEMIV 264
            |.:.|....|.::..:..||.|.|..:..|||..:..||:: .:||.|||:||:.|||.|||||
Mouse   290 ATRILFFSTPKKMTDYAKKRGWVLGPNNYYSFASQQQKPEDSTIPSTELAKQVIEYARQLEMIV 353

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rpn12NP_648904.1 CSN8_PSD8_EIF3K 119..229 CDD:462954 52/109 (48%)
Psmd8NP_080821.3 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..25
CSN8_PSD8_EIF3K 204..318 CDD:462954 54/113 (48%)
Blue background indicates that the domain is not in the aligned region.

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