DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment st and ABCG39

DIOPT Version :10

Sequence 1:NP_524108.1 Gene:st / 39836 FlyBaseID:FBgn0003515 Length:666 Species:Drosophila melanogaster
Sequence 2:NP_176867.2 Gene:ABCG39 / 843013 AraportID:AT1G66950 Length:1454 Species:Arabidopsis thaliana


Alignment Length:631 Identity:172/631 - (27%)
Similarity:282/631 - (44%) Gaps:138/631 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly    28 GSTIEVPSLDSTPKLSKRNSSERSLPLRSYSKWSPTEQGATLVWRDLCVYTNV-------GGSGQ 85
            ||.:|:.|  |:.|..||.   ..||.          |..:|.:.::..|.::       |..|.
plant   827 GSVVELNS--SSNKGPKRG---MVLPF----------QPLSLAFNNVNYYVDMPSEMKAQGVEGD 876

  Fly    86 RMKRIINNSTGAIQPGTLMALMGSSGSGKTTLMSTLAFRQPAGTVVQGDILING--RRIGPFMHR 148
            |: :::.:..||.:||.|.||:|.||:||||||..||.|:..| .::|.|.|:|  :....|. |
plant   877 RL-QLLRDVGGAFRPGILTALVGVSGAGKTTLMDVLAGRKTGG-YIEGSISISGYPKNQTTFA-R 938

  Fly   149 ISGYVYQDDLFLGSLTVLEHLNFMAHLRLDRRVSKEERRLIIKELLERTGLLSAAQTRIG-SGDD 212
            :|||..|:|:....:||.|.|.:.|.|||...:..:.|.|.::|::|...|.....:.:| .|.|
plant   939 VSGYCEQNDIHSPHVTVYESLIYSAWLRLSTDIDIKTRELFVEEVMELVELKPLRNSIVGLPGVD 1003

  Fly   213 KKVLSGGERKRLAFAVELLNNPVILFCDEPTTGLDSYSAQQLVATLYELAQKGTTILCTIHQPSS 277
            .  ||..:||||..||||:.||.|:|.||||:|||:.:|..::.|:......|.|::|||||||.
plant  1004 G--LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSI 1066

  Fly   278 QLFDNFNNVMLL-ADGRVAFTGS----PQHALSFF--------ANHGYYCPEAYNPADFLIGVLA 329
            .:|::|:.::|: ..|:|.:.||    .|..:.:|        .|.|      ||||.:::.|  
plant  1067 DIFESFDELLLMKRGGQVIYAGSLGHHSQKLVEYFEAVEGVPKINDG------YNPATWMLDV-- 1123

  Fly   330 TDPGYEQASQRSAQHLCDQFAVSSAAKQRDMLVN-------------LEIHMAQSGNFPFDTEVE 381
            |.|..|  ||.|.. ....|:.||..::...|:.             .:...|||    |.|:.:
plant  1124 TTPSME--SQMSLD-FAQIFSNSSLYRRNQELIKDLSTPPPGSKDVYFKTKYAQS----FSTQTK 1181

  Fly   382 SFRGVAWYKRFHVVWLRASLTLLRDPTIQWLRFIQKIAMAFIIGACF--AGTTEPSQLGVQAVQG 444
            :    .::|::...|        |.|....:||:..:.:..:.|..|  .||...::..:....|
plant  1182 A----CFWKQYWSYW--------RHPQYNAIRFLMTVVIGVLFGLIFWQIGTKTENEQDLNNFFG 1234

  Fly   445 ALFIMI------SENTYHPMYSVLNLFPQGFPLFMRETRSGLYSTGQYYAANILALLPGMIIEPL 503
            |::..:      :..|..|..::..      .:|.||..:|:||...|..:.:...:....|:..
plant  1235 AMYAAVLFLGALNAATVQPAIAIER------TVFYREKAAGMYSAIPYAISQVAVEIMYNTIQTG 1293

  Fly   504 IFVIICYWLTGLRST------FYAFGVTA---------MCVVLVMN--VATACGCFFSTAFNSVP 551
            ::.:|.|.:.|...|      ||.:.:|:         |.:.|..|  :|..|..||.:.:|   
plant  1294 VYTLILYSMIGCNWTMAKFLWFYYYMLTSFIYFTLYGMMLMALTPNYQIAGICMSFFLSLWN--- 1355

  Fly   552 LAMAYLVPLDYIFMITSGIFIQVNSLPVAFWWTQF-----LSWMLY 592
                          :.||..|....:|:  ||..:     ::|.||
plant  1356 --------------LFSGFLIPRPQIPI--WWRWYYWATPVAWTLY 1385

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
stNP_524108.1 3a01204 67..665 CDD:273361 161/592 (27%)
ABCG39NP_176867.2 PLN03140 14..1454 CDD:215599 172/631 (27%)

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