DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment st and ABCG20

DIOPT Version :10

Sequence 1:NP_524108.1 Gene:st / 39836 FlyBaseID:FBgn0003515 Length:666 Species:Drosophila melanogaster
Sequence 2:NP_190919.1 Gene:ABCG20 / 824519 AraportID:AT3G53510 Length:739 Species:Arabidopsis thaliana


Alignment Length:675 Identity:186/675 - (27%)
Similarity:303/675 - (44%) Gaps:91/675 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly    60 WS-------PTEQGATLVWRDL---------------CVYTNVGGSGQRM--KRIINNSTGAIQP 100
            ||       |:.....|.::||               |..:...|:...|  |.::|..:|..:.
plant    72 WSSVPSSRVPSSSPFVLSFKDLTYSVKIKKKFKPFPCCGNSPFDGNDMEMNTKVLLNGISGEARE 136

  Fly   101 GTLMALMGSSGSGKTTLMSTLAFRQPAGTVVQGDILINGRRIGPFMHR-ISGYVYQDDLFLGSLT 164
            |.:||::|:|||||:||:..||.|....: ::|||.:||..:...:|: ||.||.||||....||
plant   137 GEMMAVLGASGSGKSTLIDALANRISKES-LRGDITLNGEVLESSLHKVISAYVMQDDLLFPMLT 200

  Fly   165 VLEHLNFMAHLRLDRRVSKEERRLIIKELLERTGLLSAAQTRIGSGDDKKVLSGGERKRLAFAVE 229
            |.|.|.|.|..||...:||::::..::.|:::.||.:||:|.||. :..:.:|||||:|::...:
plant   201 VEETLMFSAEFRLPSSLSKKKKKARVQALIDQLGLRNAAKTVIGD-EGHRGVSGGERRRVSIGTD 264

  Fly   230 LLNNPVILFCDEPTTGLDSYSAQQLVATLYELAQKGTTILCTIHQPSSQLFDNFNNVMLLADGRV 294
            ::::|:|||.||||:||||.||..:|..|..:||.|:.::.:|||||.::....:.::.|:.|..
plant   265 IIHDPIILFLDEPTSGLDSTSAYMVVKVLQRIAQSGSIVIMSIHQPSYRILGLLDKLIFLSRGNT 329

  Fly   295 AFTGSPQHALSFFANHGYYCPEAYNPADF---LIGVLATDP-GYE---------QASQRSAQ--- 343
            .::|||.|...||:..|:..||..|..:|   ||..|...| |.:         :|.|.|:|   
plant   330 VYSGSPTHLPQFFSEFGHPIPENENKPEFALDLIRELEDSPEGTKSLVEFHKQWRAKQTSSQSRR 394

  Fly   344 ----HLCDQFAVSSAAKQRDMLVNLEIHMAQSGNFPFDTEVESFRGVAWYKRFHVVWLRASLTLL 404
                .|.|..   ||:..|..||        ||.....:..::|....|.:.. |:..|:.|...
plant   395 NTNVSLKDAI---SASISRGKLV--------SGATNLRSSFQTFANPFWTEML-VIGKRSILNSR 447

  Fly   405 RDPTIQWLRFIQKIAMAFIIGACFAGTTEPSQLGVQAVQGALFIMISENTYHPMYSVLNLFPQGF 469
            |.|.:..:|....:....|:...| ...:.|..|:|...| .|......|::.....:.:|.|..
plant   448 RQPELFGIRLGAVLVTGMILATIF-WKLDNSPRGIQERLG-FFAFAMSTTFYTCAEAIPVFLQER 510

  Fly   470 PLFMRETRSGLYSTGQYYAANILALLPGMIIEPLIFVIICYWLTGLRSTFYAFGVTAMCVVLVMN 534
            .:|||||....|....|..|:.:..:|.:||....|....:...||......|......::....
plant   511 YIFMRETAYNAYRRSSYVLAHTIISIPALIILSAAFAASTFSAVGLAGGSEGFLFFFFTILTAFW 575

  Fly   535 VATACGCFFSTAFNSVPLAMAYLVPLDYIFMITSGIFIQVNSLPVAFWWTQFLSWMLYANEAMTA 599
            ..::...|.|...:.|.:....:|.:...|::.||.||..:.:|:.:.|..:||.:.|..|.:..
plant   576 AGSSFVTFLSGVVSHVMIGFTVVVAILAYFLLFSGFFISRDRIPLYWIWFHYLSLVKYPYEGVLQ 640

  Fly   600 AQWSG-----VQNITCFQES--ADLP-----------------------CFHTGQDVLDKYSFNE 634
            .::..     |:.|..|..|  ..:|                       |..||.|:|.:....|
plant   641 NEFEDPTKCFVRGIQMFDNSPLGQVPTAVKISLLKSMSGVLGINVTAETCVTTGIDILKQQGITE 705

  Fly   635 SNVYRNLLAMVGLYFGFHLLGYYCL 659
            .:.:..|...|...|.|.:|.|:.|
plant   706 ISKWNCLWITVAWGFFFRVLFYFTL 730

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
stNP_524108.1 3a01204 67..665 CDD:273361 183/661 (28%)
ABCG20NP_190919.1 3a01204 120..738 CDD:273361 178/627 (28%)

Return to query results.
Submit another query.