DRSC/TRiP Functional Genomics Resources

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Protein Alignment ATPsynbetaL and Kdm5a

DIOPT Version :10

Sequence 1:NP_648836.2 Gene:ATPsynbetaL / 39761 FlyBaseID:FBgn0036568 Length:622 Species:Drosophila melanogaster
Sequence 2:NP_666109.2 Gene:Kdm5a / 214899 MGIID:2136980 Length:1690 Species:Mus musculus


Alignment Length:424 Identity:87/424 - (20%)
Similarity:145/424 - (34%) Gaps:146/424 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly   216 ELTDLSVKPEILVT--GIKVIDLLAPYVK-GGKIGLFGGAGVGKTVLIMELINNIAKSHGGYSVF 277
            ::.||....:|:.:  |.:::.....:.| |.::|...|.|.|          ::.|||  |...
Mouse   113 KILDLYALSKIVASKGGFEIVTKEKKWSKVGSRLGYLPGKGTG----------SLLKSH--YERI 165

  Fly   278 VGAGERTREGNDL---------YHEMIESKVISLEDDSSKVVLVFGQMNEPPGARSRVVLTGLTI 333
            :...|..:.|..|         ..|.:|::|:|.:...|.....  :||.|| .|:|.|.:....
Mouse   166 LYPYELFQSGVSLMGVQMPDLDLKEKVEAEVLSTDIQPSPERGT--RMNIPP-KRTRRVKSQSDS 227

  Fly   334 AEYFRDVDGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLGTDMGTMQERITS------ 392
            .|..|:.:.:.:.:|        .||.:|..|      |||.:..  .|..|.:.::|:      
Mouse   228 GEVNRNTELKKLQIF--------GAGPKVVGL------AVGAKDK--EDEVTRRRKVTNRSDAFN 276

  Fly   393 ----TRNGSITSVQAV--YV--------------PADDLSDPAPAATFSHLDATTVLSRPIAELG 437
                .|.|:: ||..|  ||              ..|...|.      .|   |..|..|:    
Mouse   277 MQMRQRKGTL-SVNFVDLYVCMFCGRGNNEDKLLLCDGCDDS------YH---TFCLLPPL---- 327

  Fly   438 IYPAVDPLDSSSRILDPDVVGE------EHYNVARAVQK-TLQAYKSLQDIIAILGMDELSEEDK 495
              |.|...|...    |..|.|      |.:...:||:: |||::..:.|               
Mouse   328 --PDVPKGDWRC----PKCVAEECNKPREAFGFEQAVREYTLQSFGEMAD--------------- 371

  Fly   496 LTVARARKMQRFLSQPFQVAEIFTGHPGKLVPVEKCVEGFKRLLNGEYDDIPEIAFYMVGDAEEV 560
                      .|.|..|.:       |..:||.|...:.|.||::...:|:             :
Mouse   372 ----------NFKSDYFNM-------PVHMVPTELVEKEFWRLVSSIEEDV-------------I 406

  Fly   561 LAKATQLAASMSGDAPPAKAEAKKDEKKDTKPEE 594
            :.....:::...|...|     |||.::...|||
Mouse   407 VEYGADISSKDFGSGFP-----KKDGQRKMLPEE 435

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ATPsynbetaLNP_648836.2 AtpD 103..570 CDD:439825 79/398 (20%)
Kdm5aNP_666109.2 JmjN 18..59 CDD:128818
ARID_KDM5A 84..175 CDD:350637 15/73 (21%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 203..229 8/28 (29%)
PHD1_KDM5A 295..343 CDD:277075 12/66 (18%)
GSGFP motif. /evidence=ECO:0000269|PubMed:20064375 419..423 1/3 (33%)
JmjC 470..586 CDD:396791
zf-C5HC2 676..728 CDD:460750
PLU-1 741..1072 CDD:462475
PHD2_KDM5A 1163..1215 CDD:277079
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1327..1346
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1407..1435
PHD3_KDM5A 1608..1659 CDD:277156
Interaction with LMO2. /evidence=ECO:0000250|UniProtKB:P29375 1622..1690
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1662..1690
Blue background indicates that the domain is not in the aligned region.

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