Protein Alignment PolD1 and AT5G63960

DIOPT Version :10

• Sequence 1: NP_524099.2
• Gene: PolD1 / 39746
• FlyBaseID: FBgn0263600
• Length: 1092
• Species: Drosophila melanogaster
• Sequence 2: NP_001190611.1
• Gene: AT5G63960 / 836517
• AraportID: AT5G63960
• Length: 1112
• Species: Arabidopsis thaliana
• Alignment Length: 1132
• Identity: 598/1132 - (52%)
• Similarity: 749/1132 - (66%)
• Gaps: 84/1132 - (7%)

  Fly     3 GKRKFNGTSNGHAKKPRNPD------DDEEMGFEAELAAFENSEDMDQTLLMGDG---------- 51
            ||.:..|.|        .|.      |||.|        .|....:|:|||.||.
plant    21 GKHRATGDS--------TPSPAIGTLDDEFM--------MEEDVFLDETLLYGDEDEESLILRDI 69

  Fly    52 PENQTTSERWSRPP--PPELDPSKHNLEFQQLDVENYLGQP----LPGMPGAQIGPVPVVRMFGV 110
            .|.::.|..|:|||  |..|..|: ::.||||::::.:.:.    |||    ..|..|::|||||
plant    70 EERESRSSAWARPPLSPAYLSNSQ-SIIFQQLEIDSIIAESHKELLPG----SSGQAPIIRMFGV 129

  Fly   111 TMEGNSVCCHVHGFCPYFYIEAPSQFEEHHCEKLQKALDQKVIADIRNNKDNVQEAVLMVELVEK 175
            |.|||||||.||||.|||||..|............::|:.::....:|.|  |.:.|..:|:|:|
plant   130 TREGNSVCCFVHGFEPYFYIACPPGMGPDDISNFHQSLEGRMRESNKNAK--VPKFVKRIEMVQK 192

  Fly   176 LNIHGYNGDKKQRYIKISVTLPRFVAAASRLLKKEVIMSEIDFQDCRAFENNIDFDIRFMVDTDV 240
            .:|..|...|.|.::||:|.||..||:...:|.:.:.:..:..:..:.:|:||.|.:|||||.|:
plant   193 RSIMYYQQQKSQTFLKITVALPTMVASCRGILDRGLQIDGLGMKSFQTYESNILFVLRFMVDCDI 257

  Fly   241 VGCNWIELPMGHWRIRNSHSKPLPESRCQIEVDVAFDRFISHEPEGEWSKVAPFRILSFDIECAG 305
            ||.||||:|.|.:: :|:.:.    |.||:|....:...|||..|||:||:||||:|||||||||
plant   258 VGGNWIEVPTGKYK-KNARTL----SYCQLEFHCLYSDLISHAAEGEYSKMAPFRVLSFDIECAG 317

  Fly   306 RKGIFPEAKIDPVIQIANMVIRQGEREPFIRNVFTLNECAPIIGSQVLCHDKETQMLDKW----- 365
            |||.|||||.||||||||:|..|||..||:|||.||..||||:|..|:..:.|.::|..|
plant   318 RKGHFPEAKHDPVIQIANLVTLQGEDHPFVRNVMTLKSCAPIVGVDVMSFETEREVLLAWRVLFL 382

  Fly   366 ------------SAFVREVDPDILTGYNINNFDFPYLLNRAAHLKVRNFEYLGRIKNIRSVIKEQ 418
                        |..:|:|||||:.||||..||.|||:.|||.|.:..|..|||:||.|..:::.
plant   383 PLHYYICITSSSSDLIRDVDPDIIIGYNICKFDLPYLIERAATLGIEEFPLLGRVKNSRVRVRDS 447

  Fly   419 MLQSKQMGRRENQYVNFEGRVPFDLLFVLLRDYKLRSYTLNAVSYHFLQEQKEDVHHSIITDLQN 483
            ...|:|.|.||::....|||..|||:..:.||:||.||:||:||.|||.||||||||||||||||
plant   448 TFSSRQQGIRESKETTIEGRFQFDLIQAIHRDHKLSSYSLNSVSAHFLSEQKEDVHHSIITDLQN 512

  Fly   484 GDEQTRRRLAMYCLKDAYLPLRLLEKLMAIVNYMEMARVTGVPLESLLTRGQQIKVLSQLLRKAK 548
            |:.:||||||:|||||||||.|||:|||.|.||:|||||||||:..||.|||.||||||||||.|
plant   513 GNAETRRRLAVYCLKDAYLPQRLLDKLMFIYNYVEMARVTGVPISFLLARGQSIKVLSQLLRKGK 577

  Fly   549 TKGFIMPSYTSQGSDE-QYEGATVIEPKRGYYADPISTLDFASLYPSIMMAHNLCYTTLVLGGTR 612
            .|..::|:....||:: .||||||:|.:.|:|..||:||||||||||||||:||||.|||   |.
plant   578 QKNLVLPNAKQSGSEQGTYEGATVLEARTGFYEKPIATLDFASLYPSIMMAYNLCYCTLV---TP 639

  Fly   613 EKLRQQENLQDDQVERTPANNYFVKSEVRRGLLPEILESLLAARKRAKNDLKVETDPFKRKVLDG 677
            |.:|:. ||..:.|.:||:...|||..:::|:||||||.||.||||||.|||...||.::.||||
plant   640 EDVRKL-NLPPEHVTKTPSGETFVKQTLQKGILPEILEELLTARKRAKADLKEAKDPLEKAVLDG 703

  Fly   678 RQLALKISANSVYGFTGAQVGKLPCLEISGSVTAYGRTMIEMTKNEVESHYTQANGYENNAVVIY 742
            ||||||||||||||||||.||:|||||||.|||:|||.|||.||..||..:|...||:.||.|||
plant   704 RQLALKISANSVYGFTGATVGQLPCLEISSSVTSYGRQMIEQTKKLVEDKFTTLGGYQYNAEVIY 768

  Fly   743 GDTDSVMVNFGVKTLERSMELGREAAELVSSKFVHPIKLEFEKVYYPYLLINKKRYAGLYFTRPD 807
            ||||||||.|||..:|.:|.|||||||.:|..|:.||||||||||:|||||||||||||.:|.|.
plant   769 GDTDSVMVQFGVSDVEAAMTLGREAAEHISGTFIKPIKLEFEKVYFPYLLINKKRYAGLLWTNPQ 833

  Fly   808 TYDKMDCKGIETVRRDNSPLVANLMNSCLQKLLIERDPDGAVAYVKQVIADLLCNRIDISHLVIT 872
            .:||||.||||||||||..||.||:...|.|:||:||..||...||:.|:|||.||||:|.||||
plant   834 QFDKMDTKGIETVRRDNCLLVKNLVTESLNKILIDRDVPGAAENVKKTISDLLMNRIDLSLLVIT 898

  Fly   873 KELAKT--DYAAKQAHVELAAKMKKRDPGTAPKLGDRVPYVICAAAKNTPAYQKAEDPLYVLENS 935
            |.|.||  ||..|.||.|||.:|:|||..|||.:||||||||..|||...||:::|||:|||:|:
plant   899 KGLTKTGDDYEVKSAHGELAERMRKRDAATAPNVGDRVPYVIIKAAKGAKAYERSEDPIYVLQNN 963

  Fly   936 VPIDATYYLEQQLSKPLLRIFEPILGDNAESILLKGEHTRTRTVVTSKVGGLAGFMTKKTSCLGC 1000
            :|||..||||.|:||||||||||:| .||...||.|.|||:.::.|....|:..|..|:.||:||
plant   964 IPIDPNYYLENQISKPLLRIFEPVL-KNASKELLHGSHTRSISITTPSNSGIMKFAKKQLSCVGC 1027

  Fly  1001 KSLMPKGYEQACLCPHCEPRMSELYQKEVGAKRELEETFSRLWTECQRCQESLHEEVICSNRDCP 1065
            |..:..|    .||..|:.|.:|||.|.|....||||.|.||||:||.||.|||::|:|::||||
plant  1028 KVPISNG----TLCASCKGREAELYCKNVSQVAELEEVFGRLWTQCQECQGSLHQDVLCTSRDCP 1088

  Fly  1066 IFYMRQKVRMDLDNQEKRVLRFGLAEW 1092
            |||.|.|.:.|:     .|.|..|..|
plant  1089 IFYRRMKAQKDM-----AVARQQLDRW 1110

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
PolD1	NP_524099.2	PTZ00166	48..1092	CDD:240301	583/1079 (54%)
AT5G63960	NP_001190611.1	PTZ00166	81..1109	CDD:240301	578/1053 (55%)