DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment dlp and gpc6a

DIOPT Version :10

Sequence 1:NP_524071.2 Gene:dlp / 39596 FlyBaseID:FBgn0041604 Length:765 Species:Drosophila melanogaster
Sequence 2:NP_001103189.1 Gene:gpc6a / 571904 ZFINID:ZDB-GENE-071004-15 Length:562 Species:Danio rerio


Alignment Length:677 Identity:219/677 - (32%)
Similarity:320/677 - (47%) Gaps:156/677 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly    25 LVIFSSPLLLLLLTTHLPPTLQADNGPAPQVAALAAPNPAGGVAGSSIIDQFSPNCSAVTHIFQA 89
            :|:|:|..|||.|:.                        ||.|.        |.:||.|...|..
Zfish     6 VVVFTSLSLLLSLSC------------------------AGDVK--------SRSCSDVRLAFTT 38

  Fly    90 RGIDAIEIPQKPSNERVLRYCESPSVGTCCTYNMETRMAMQSRQQLEGHTKDQISRMSGILGSKA 154
            :|.....:|.:..:...||.|....  ||||.:||.::..||:...|....|....:.....|:.
Zfish    39 KGFSLHNVPHQEISGEHLRVCAQGY--TCCTSDMEDQLGQQSKLDFERLVDDSSRNIRTTFTSRH 101

  Fly   155 TKFKDIFTALLKESRTQFNSMFIRTYGVIYERNSYVFSDLFKELETYFANGRVDLLEVMDKFFNT 219
            .||.:.|..||..|....|.||:||||.:|..||.:|.|||.||:.|:..|.|:|.||::.|::.
Zfish   102 KKFDEFFLELLDNSEKSLNDMFVRTYGKLYTHNSEMFEDLFSELKRYYTGGNVNLEEVLNDFWSR 166

  Fly   220 LYQKMFTVLNTQYTFDENYMRCVSEHMKELKPFGDVPDKLSVQIKRSFVATRTYGQALTTASEVA 284
            |.::||.:||:|:||.::|:.|:|::..:||||||||.||..|:.::|:|.|::.|.|....|||
Zfish   167 LLERMFQLLNSQFTFSDDYLECISKYTDQLKPFGDVPRKLKAQVTKAFIAARSFVQGLMVGREVA 231

  Fly   285 KKVLNVRLNADCTGALTKMQHCGACKGYTE-KPCTNYCVNVIKGCLHYQHEFDSEWENFAMAMDK 348
            .:|..|.::..|:.|||||.:|..|.|.:. |||.|||.||::|||..|.:.|.||..|..||..
Zfish   232 NRVAKVNISPGCSKALTKMWYCPYCGGMSGLKPCANYCQNVMRGCLANQADLDPEWNLFIDAMLL 296

  Fly   349 VAERLLGSFNIVMVVEPLNIKISEAIMNFQDSGQDITNRVFQGCGRPKLKKMKRSISPKLQGV-Q 412
            ||:||.|.|||..|:||:::|||||||..||:...::::||||||.||...:.||    .:|: .
Zfish   297 VADRLEGPFNIEAVMEPIDVKISEAIMTMQDNSMQVSSKVFQGCGHPKAASVGRS----ARGISD 357

  Fly   413 ILNAR-----SPVEADTLDIDETLDE-AIVLRERRAAEPGSQETSAQQSQEQGVGKSGNGGGGGG 471
            :.|:|     ||.|..|.....:||. .||.|            :.|.|                
Zfish   358 VFNSRFKPFNSPEERPTTAAGTSLDRLRIVWR------------TMQHS---------------- 394

  Fly   472 GNNRRQQQRRKQQQQRRKQQNNRDDNDDDDNESGGGREPILDRIVRDIRQRVKDYKKFWSNLPHS 536
                                                        |.||::::|:.::|||:||.|
Zfish   395 --------------------------------------------VVDIKEKLKESRRFWSSLPDS 415

  Fly   537 VCSNEDIASSSDVDGMCWNGHTIDRYMHSIT----TEHGSNPEFTGNPASTKQTAQMASQLSHLK 597
            :|:.:::....  :..|||.||..||...:.    |...:|||...:  .|:....:..|:..|:
Zfish   416 ICAEDEMTDPD--EEQCWNSHTRGRYFPEVVKDGLTNQLNNPEVEVD--ITRPDTFIRQQIMTLR 476

  Fly   598 NAIVHLRNAYNGQDVEW--SEQEELPYAGSGAGSGSGSEDDEDDDEGSGLGPFEPSHKPDV---E 657
            .....|||||||:||.:  |..||   :|||:|||..:|                   |:|   |
Zfish   477 VMTNKLRNAYNGKDVYFQDSSDEE---SGSGSGSGFTTE-------------------PEVVHTE 519

  Fly   658 RPSVDADNDDDE---DAGGRGHMPTHT 681
            .|.::||..|.:   |||.....|:.|
Zfish   520 PPMLEADKSDPQPPTDAGSVQQKPSVT 546

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
dlpNP_524071.2 Glypican 79..619 CDD:460084 187/553 (34%)
gpc6aNP_001103189.1 Glypican 22..494 CDD:460084 189/561 (34%)

Return to query results.
Submit another query.