DRSC/TRiP Functional Genomics Resources

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Protein Alignment Sox21a and Sox11

DIOPT Version :10

Sequence 1:NP_001261827.1 Gene:Sox21a / 39567 FlyBaseID:FBgn0036411 Length:407 Species:Drosophila melanogaster
Sequence 2:NP_445801.1 Gene:Sox11 / 84046 RGDID:69351 Length:395 Species:Rattus norvegicus


Alignment Length:337 Identity:107/337 - (31%)
Similarity:150/337 - (44%) Gaps:67/337 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly   102 APTSHSNSNTGSHHNSHDHIKRPMNAFMVWSRGQRRKMAQDNPKMHNSEISKRLGAEWKLLTEGQ 166
            :|.:...|:......:..|||||||||||||:.:|||:.:.:|.|||:|||||||..||:|.:.:
  Rat    30 SPVALDESDPDWCKTASGHIKRPMNAFMVWSKIERRKIMEQSPDMHNAEISKRLGKRWKMLKDSE 94

  Fly   167 KRPFIDEAKRLRALHMKEHPDYKYRPRRKPKT-------LNKSPVPGGGG-----GGGGGGANGG 219
            |.|||.||:|||..||.::||||||||:||||       ..:||.....|     |.|...|...
  Rat    95 KIPFIREAERLRLKHMADYPDYKYRPRKKPKTDPAAKPSAGQSPDKSAAGAKAAKGPGKKCAKLK 159

  Fly   220 VNAGGAGNSGPSGPGSVGSPK----------------DMQPQLSPLGQSLPHLHGHPHQSPYQSH 268
            ..||.||....:.||..|:.|                |.:.||.|          .|........
  Rat   160 APAGKAGAGKAAQPGDCGAGKAAKCVFLDDDDEEDDEDDELQLRP----------KPDADDDDDE 214

  Fly   269 PHHPHPHPHHVQLAAATLSAKYGFGSPLELSLPRLPNAFPGLAHYPLDPTLALDLQARLQA-MY- 331
            |.|.|..|...|.....|..:|                  .:|..|..|||:...::...| :| 
  Rat   215 PAHSHLLPPPAQQQPPQLLRRY------------------SVAKVPASPTLSSAAESPEGASLYD 261

  Fly   332 ----AGSIYHPWRYLPLISPETPPSPPSSSGTGISSYGCVKSEKSSPNAVVASAASPPNIIXPTP 392
                .|.:|:.::.:....|  ||:||:.|.   :|..||.:..||.::..:.|....::: ...
  Rat   262 EVRAGGRLYYSFKNITKQQP--PPAPPALSP---ASSRCVSTSSSSGSSSGSGAEDADDLMFDLS 321

  Fly   393 LRFGAGTSSSAE 404
            |.|..|..|:.|
  Rat   322 LNFSQGAHSACE 333

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sox21aNP_001261827.1 HMG-box_SoxB 119..198 CDD:438790 51/78 (65%)
Sox11NP_445801.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..22
HMG-box_SoxC_SOX11 38..129 CDD:438846 53/90 (59%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 114..258 43/171 (25%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 276..312 12/40 (30%)
Required for transcriptional activation activity and synergistic coactivation of transcriptional activity with POU3F2. /evidence=ECO:0000250|UniProtKB:Q7M6Y2 363..395
Blue background indicates that the domain is not in the aligned region.

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