Protein Alignment Sox21a and HMGB1

DIOPT Version :10

• Sequence 1: NP_001261827.1
• Gene: Sox21a / 39567
• FlyBaseID: FBgn0036411
• Length: 407
• Species: Drosophila melanogaster
• Sequence 2: NP_974413.1
• Gene: HMGB1 / 824351
• AraportID: AT3G51880
• Length: 185
• Species: Arabidopsis thaliana
• Alignment Length: 143
• Identity: 31/143 - (21%)
• Similarity: 50/143 - (34%)
• Gaps: 29/143 - (20%)

  Fly    53 MSVGVGSGSGNTTPPPMPPAD------LAVPPAAPTPVAPKMHQHTHHHGNSHHNAPTSHSNSNT 111
            |....|.....||...:.|.|      ...|...||    |.............|.|
plant     1 MKTAKGKDKVKTTKEALKPVDDRKVGKRKAPAEKPT----KRETRKEKKAKKDPNKP-------- 53

  Fly   112 GSHHNSHDHIKRPMNAFMVWSRGQRRKMAQDNPKMHN-SEISKRLGAEWKLLTEGQKRPFIDEAK 175
                      ||..:||.|:....|....::||.:.. |.:.|..|.:||.:::.:|.|:.::|.
plant    54 ----------KRAPSAFFVFLEDFRVTFKKENPNVKAVSAVGKAGGQKWKSMSQAEKAPYEEKAA 108

  Fly   176 RLRALHMKEHPDY 188
            :.:|.:.|:...|
plant   109 KRKAEYEKQMDAY 121

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Sox21a	NP_001261827.1	HMG-box_SoxB	119..198	CDD:438790	19/71 (27%)
HMGB1	NP_974413.1	PRK05901	1..>171	CDD:235640	31/143 (22%)
		HMG-box_AtHMGB1-like	54..114	CDD:438821	17/59 (29%)