DRSC/TRiP Functional Genomics Resources

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Protein Alignment Sox21a and hmg20a

DIOPT Version :10

Sequence 1:NP_001261827.1 Gene:Sox21a / 39567 FlyBaseID:FBgn0036411 Length:407 Species:Drosophila melanogaster
Sequence 2:NP_001006760.1 Gene:hmg20a / 448440 XenbaseID:XB-GENE-955353 Length:345 Species:Xenopus tropicalis


Alignment Length:96 Identity:22/96 - (22%)
Similarity:47/96 - (48%) Gaps:11/96 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly   122 KRPMNAFMVWSRGQRRKMAQDNPKMHNSEISKRLGAEWKLLTEGQKRPFIDEAKRLRALHMKEHP 186
            |.|:..::.:...:|.::..:.|.:...||::.:|:||..|...:|:.::|||::.:..:.||..
 Frog   102 KAPLTGYVRFMNERREQLRTERPDVPFPEITRIVGSEWSKLPAHEKQHYLDEAEKDKERYTKELQ 166

  Fly   187 DY-----------KYRPRRKPKTLNKSPVPG 206
            .|           |.:.|:|.:...:..|.|
 Frog   167 QYQNTDAYQTYSRKAQSRQKGRQQRQEGVRG 197

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sox21aNP_001261827.1 HMG-box_SoxB 119..198 CDD:438790 20/86 (23%)
hmg20aNP_001006760.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..124 3/21 (14%)
HMG-box_HMG20A 81..184 CDD:438833 18/81 (22%)
SMC_prok_B <151..>292 CDD:274008 11/47 (23%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 167..198 6/31 (19%)

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