DRSC/TRiP Functional Genomics Resources

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Protein Alignment Sox21a and sox4a

DIOPT Version :10

Sequence 1:NP_001261827.1 Gene:Sox21a / 39567 FlyBaseID:FBgn0036411 Length:407 Species:Drosophila melanogaster
Sequence 2:NP_998287.1 Gene:sox4a / 336346 ZFINID:ZDB-GENE-030131-8290 Length:363 Species:Danio rerio


Alignment Length:390 Identity:107/390 - (27%)
Similarity:155/390 - (39%) Gaps:120/390 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly    26 HSHSSSLSPQLPGINLGLGMVGGLGMGMSVGVGSGSGNTTPPPMPPADLAVPPAAPTPVAPKMHQ 90
            |:.|||.|..|||.::..|.:                          ||.: .|:|||.:|    
Zfish    12 HTSSSSSSDVLPGDSIDSGEM--------------------------DLDM-DASPTPGSP---- 45

  Fly    91 HTHHHGNSHHNAPTSHSNSNTGSHHNSHDHIKRPMNAFMVWSRGQRRKMAQDNPKMHNSEISKRL 155
                 .::......:...:.:|       |||||||||||||:.:|||:.:.:|.|||:||||||
Zfish    46 -----NSAGDKMDIAWCKTPSG-------HIKRPMNAFMVWSQIERRKIMEQSPDMHNAEISKRL 98

  Fly   156 GAEWKLLTEGQKRPFIDEAKRLRALHMKEHPDYKYRPRRKPKTLNKSPVPGGGGGGGGGGANGGV 220
            |..||||.:..|.|||.||:|||..||.::||||||||:|.|:                      
Zfish    99 GKRWKLLKDSDKIPFIREAERLRLKHMADYPDYKYRPRKKVKS---------------------- 141

  Fly   221 NAGGAGNSG---PSGPGSVGSPKDMQPQLSPLGQSLPHLHGHPHQSPYQSHPHHPHPHPHHVQLA 282
            ::|..|...   .:.||:..:.|.....||       ..|   .:|.......|..|..||....
Zfish   142 SSGKTGEKAERVSASPGAKSASKKSSKTLS-------RTH---RKSTTLELTSHSVPADHHALYK 196

  Fly   283 AATLSAKYGFGSPLELSLPRLP----NAFPGLAHYPLDPTLALDLQARLQAMYAGSIYHPWRYLP 343
            :.::||        ...:|..|    :.:.|.:.....|::|:...                  |
Zfish   197 SRSVSA--------AKQIPEKPAKRGHVYGGCSTDSSPPSVAVPAS------------------P 235

  Fly   344 LISPETPPSPP-SSSGTGISSYGCVKSEKSSPNAVVASAASPPNIIXPTPL---RFGAGTSSSAE 404
            .:|.....|.| |....|::|    ..|.:.|.|......:|    .|||.   .:.:.:|||.|
Zfish   236 TLSSSAESSDPLSLYEDGLAS----GKEDAEPAARFKYTRAP----SPTPSASHSYSSQSSSSDE 292

  Fly   405  404
            Zfish   293  292

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sox21aNP_001261827.1 HMG-box_SoxB 119..198 CDD:438790 51/78 (65%)
sox4aNP_998287.1 HMG-box_SoxC 63..138 CDD:438838 50/74 (68%)

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