DRSC/TRiP Functional Genomics Resources

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Protein Alignment Sox21a and Sox8

DIOPT Version :10

Sequence 1:NP_001261827.1 Gene:Sox21a / 39567 FlyBaseID:FBgn0036411 Length:407 Species:Drosophila melanogaster
Sequence 2:NP_001100459.1 Gene:Sox8 / 302993 RGDID:1309072 Length:463 Species:Rattus norvegicus


Alignment Length:410 Identity:118/410 - (28%)
Similarity:159/410 - (38%) Gaps:115/410 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly    19 TSSGSSNHSHSSSLSPQLPGINLGLGMVGGLGMGMSVGVGSGSGNTTPPPMPPADLAVPPA---- 79
            |:|..|:...|.|.:|..|..:.|||..|          |.|.|:|.    ..||...|..    
  Rat    18 TASSMSHVEDSDSDAPPSPAGSEGLGRAG----------GGGRGDTA----EAADERFPACIRDA 68

  Fly    80 ------------APTPVAPKMHQHTHHHGNSHHNAPTSHSNSNTGSHHNSHDHIKRPMNAFMVWS 132
                        .|.||                       ....|....:..|:||||||||||:
  Rat    69 VSQVLKGYDWSLVPMPV-----------------------RGGGGGTLKAKPHVKRPMNAFMVWA 110

  Fly   133 RGQRRKMAQDNPKMHNSEISKRLGAEWKLLTEGQKRPFIDEAKRLRALHMKEHPDYKYRPRRKP- 196
            :..|||:|...|.:||:|:||.||..|:||:|.:||||::||:|||..|.|:||||||:|||:. 
  Rat   111 QAARRKLADQYPHLHNAELSKTLGKLWRLLSESEKRPFVEEAERLRVQHKKDHPDYKYQPRRRKS 175

  Fly   197 -KTLNKSPVPGGGGGGGGGGANGGVNAGGAGNSGPSGPGSVGSPKDMQPQLSPLGQSLPHLH--- 257
             ||             |...::.|...|    ..|.||        |....:.||.:  |.|   
  Rat   176 VKT-------------GRSDSDSGTELG----HHPGGP--------MYKTDTVLGDA--HRHSDH 213

  Fly   258 -GHPHQSPYQSHPHHPHPHPHHVQLAAATLSAKYGFGSPLELSLPRLPNAFPGLAHYPLDPTLAL 321
             |..|..|  :.|..|....|         .|..|....|.|...||.::  |..:.........
  Rat   214 TGQTHGPP--TPPTTPKTDLH---------QASNGSKQELRLEGRRLVDS--GRQNIDFSNVDIS 265

  Fly   322 DLQAR-LQAMYAGSIYHPWRYLPL---ISPETPPSPPSSSGTGISSYGCVKSEKSSPNAVVAS-- 380
            :|.:. :..|....::...:||||   .:..|.||..::||    |||......|....:.||  
  Rat   266 ELSSEVISNMDTFDVHEFDQYLPLNGHSALATEPSQATASG----SYGGASYSHSGATGIGASPV 326

  Fly   381 ---AASPPNIIXPT---PLR 394
               ..:|.... ||   |||
  Rat   327 WAHKGAPSASASPTEAGPLR 346

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sox21aNP_001261827.1 HMG-box_SoxB 119..198 CDD:438790 47/80 (59%)
Sox8NP_001100459.1 Sox_N 18..86 CDD:463586 21/104 (20%)
HMG-box_SoxE 98..172 CDD:438840 45/73 (62%)

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