DRSC/TRiP Functional Genomics Resources

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Protein Alignment Sox21a and Sox10

DIOPT Version :10

Sequence 1:NP_001261827.1 Gene:Sox21a / 39567 FlyBaseID:FBgn0036411 Length:407 Species:Drosophila melanogaster
Sequence 2:NP_062066.1 Gene:Sox10 / 29361 RGDID:3735 Length:466 Species:Rattus norvegicus


Alignment Length:332 Identity:104/332 - (31%)
Similarity:138/332 - (41%) Gaps:107/332 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly   117 SHDHIKRPMNAFMVWSRGQRRKMAQDNPKMHNSEISKRLGAEWKLLTEGQKRPFIDEAKRLRALH 181
            |..|:||||||||||::..|||:|...|.:||:|:||.||..|:||.|..|||||:||:|||..|
  Rat   100 SKPHVKRPMNAFMVWAQAARRKLADQYPHLHNAELSKTLGKLWRLLNESDKRPFIEEAERLRMQH 164

  Fly   182 MKEHPDYKYRPRRKPK---TLNKSPVPGGGGGGGGGGA-NGGVNAGGAGNSGP--SGPGSVGSPK 240
            .|:||||||:|||:..   ...::..|||....||..| .....:....:..|  ..|.|.|:|:
  Rat   165 KKDHPDYKYQPRRRKNGKAAQGEAECPGGETDQGGAAAIQAHYKSAHLDHRHPEEGSPMSDGNPE 229

  Fly   241 DMQPQLSPLGQSLPHLHGHP-----HQSPYQS----------------HPH------------H- 271
                  .|.|||    ||.|     .::..||                .||            | 
  Rat   230 ------HPSGQS----HGPPTPPTTPKTELQSGKADPKRDGRSLGEGGKPHIDFGNVDIGEISHE 284

  Fly   272 ------------------PHPHPHHVQLAAATLSAKYGFGSPLE--------LSLPRLPNAFPGL 310
                              |:.||.||...:|   |.||..|.|.        :|.|      ||:
  Rat   285 VMSNMETFDVTELDQYLPPNGHPGHVGSYSA---AGYGLSSALAVASGHSAWISKP------PGV 340

  Fly   311 AHYPLDPTLALDLQARLQAMYAGSIYHPWRYLPLISPETPP---SPPSSSGTGISS-----YGCV 367
            |...:.|. |:|.:|:::....|             |:.||   ..||:|....:|     ||..
  Rat   341 ALPTVSPP-AVDAKAQVKTETTG-------------PQGPPHYTDQPSTSQIAYTSLSLPHYGSA 391

  Fly   368 KSEKSSP 374
            ....|.|
  Rat   392 FPSISRP 398

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sox21aNP_001261827.1 HMG-box_SoxB 119..198 CDD:438790 48/81 (59%)
Sox10NP_062066.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..67
Sox_N 12..93 CDD:463586
Dimerization (DIM). /evidence=ECO:0000250|UniProtKB:P56693 62..102 1/1 (100%)
HMG-box_SoxE 103..177 CDD:438840 46/73 (63%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 160..198 16/37 (43%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 213..275 16/71 (23%)
Transactivation domain (TAM). /evidence=ECO:0000250|UniProtKB:P56693 228..310 16/91 (18%)
Transactivation domain (TAC). /evidence=ECO:0000250|UniProtKB:P56693 353..466 13/59 (22%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 355..375 5/32 (16%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 433..466
Blue background indicates that the domain is not in the aligned region.

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