DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Sox21a and Sox8

DIOPT Version :10

Sequence 1:NP_001261827.1 Gene:Sox21a / 39567 FlyBaseID:FBgn0036411 Length:407 Species:Drosophila melanogaster
Sequence 2:NP_035577.1 Gene:Sox8 / 20681 MGIID:98370 Length:464 Species:Mus musculus


Alignment Length:408 Identity:117/408 - (28%)
Similarity:158/408 - (38%) Gaps:110/408 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly    19 TSSGSSNHSHSSSLSPQLPGINLGLGMVGGLGMGMSVGVGSGSGNTTPPPMPPADLAVPPA---- 79
            |:|..|:...|.|.:|..|..:.|||..|          |.|.|:|.    ..||...|..    
Mouse    18 TASSMSHVEDSDSDAPPSPAGSEGLGRAG----------GGGRGDTA----EAADERFPACIRDA 68

  Fly    80 ------------APTPVAPKMHQHTHHHGNSHHNAPTSHSNSNTGSHHNSHDHIKRPMNAFMVWS 132
                        .|.||                       ....|....:..|:||||||||||:
Mouse    69 VSQVLKGYDWSLVPMPV-----------------------RGGGGGTLKAKPHVKRPMNAFMVWA 110

  Fly   133 RGQRRKMAQDNPKMHNSEISKRLGAEWKLLTEGQKRPFIDEAKRLRALHMKEHPDYKYRPRRKP- 196
            :..|||:|...|.:||:|:||.||..|:||:|.:||||::||:|||..|.|:||||||:|||:. 
Mouse   111 QAARRKLADQYPHLHNAELSKTLGKLWRLLSESEKRPFVEEAERLRVQHKKDHPDYKYQPRRRKS 175

  Fly   197 -KTLNKSPVPGGGGGGGGGGANGGVNAGGAGNSGPSGPGSVGSPKDMQPQLSPLGQSLPHLHGHP 260
             ||             |...::.|...|    ..|.||        |....:.||::  |.|...
Mouse   176 VKT-------------GRSDSDSGTELG----HHPGGP--------MYKADAVLGEA--HHHSDH 213

  Fly   261 HQSPYQSH-----PHHPHPHPHHVQLAAATLSAKYGFGSPLELSLPRLPNAFPGLAHYPLDPTLA 320
            |..  |:|     |..|....|         .|..|....|.|...||.::  |..:........
Mouse   214 HTG--QTHGPPTPPTTPKTDLH---------QASNGSKQELRLEGRRLVDS--GRQNIDFSNVDI 265

  Fly   321 LDLQAR-LQAMYAGSIYHPWRYLPLISPETPPSPPSSSGTGISSYGCVKSEKSSPNAVVAS---- 380
            .:|.:. :..|....::...:||||......|:.||.: |...|||......|....:.||    
Mouse   266 SELSSEVISNMDTFDVHEFDQYLPLNGHSALPTEPSQA-TASGSYGGASYSHSGATGIGASPVWA 329

  Fly   381 -AASPPNIIXPT---PLR 394
             ..:|.....||   |||
Mouse   330 HKGAPSASASPTEAGPLR 347

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sox21aNP_001261827.1 HMG-box_SoxB 119..198 CDD:438790 47/80 (59%)
Sox8NP_035577.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..55 15/50 (30%)
Sox_N 18..86 CDD:463586 21/104 (20%)
Dimerization (DIM). /evidence=ECO:0000250|UniProtKB:P57073 55..97 7/64 (11%)
HMG-box_SoxE 98..172 CDD:438840 45/73 (62%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 154..244 35/127 (28%)
Transactivation domain (TAM). /evidence=ECO:0000250|UniProtKB:P57073 221..299 17/88 (19%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 292..315 7/23 (30%)
Transactivation domain (TAC). /evidence=ECO:0000250|UniProtKB:P57073 347..464 1/1 (100%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 354..374
9aaTAD. /evidence=ECO:0000250|UniProtKB:P57073 418..426
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 444..464
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.