DRSC/TRiP Functional Genomics Resources

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Protein Alignment Sox21a and Sox2

DIOPT Version :10

Sequence 1:NP_001261827.1 Gene:Sox21a / 39567 FlyBaseID:FBgn0036411 Length:407 Species:Drosophila melanogaster
Sequence 2:NP_035573.3 Gene:Sox2 / 20674 MGIID:98364 Length:319 Species:Mus musculus


Alignment Length:339 Identity:134/339 - (39%)
Similarity:160/339 - (47%) Gaps:84/339 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly    82 TPVAPKMHQHTHHHGNSHHNAPTSHSNSNTGSHHNSHDHIKRPMNAFMVWSRGQRRKMAQDNPKM 146
            |.:.|...|.....|....||..:   :..|:..||.|.:||||||||||||||||||||:||||
Mouse     7 TELKPPGPQQASGGGGGGGNATAA---ATGGNQKNSPDRVKRPMNAFMVWSRGQRRKMAQENPKM 68

  Fly   147 HNSEISKRLGAEWKLLTEGQKRPFIDEAKRLRALHMKEHPDYKYRPRRKPKTL---NKSPVPGG- 207
            ||||||||||||||||:|.:|||||||||||||||||||||||||||||.|||   :|..:||| 
Mouse    69 HNSEISKRLGAEWKLLSETEKRPFIDEAKRLRALHMKEHPDYKYRPRRKTKTLMKKDKYTLPGGL 133

  Fly   208 ---------GGGGGGGGANGGVNAGGAGNSGPSGPGSVGSPKDMQPQLSPLGQSLPHLHGHPHQS 263
                     .|.|.|.|...|||......:..:| .|.||...||.||                 
Mouse   134 LAPGGNSMASGVGVGAGLGAGVNQRMDSYAHMNG-WSNGSYSMMQEQL----------------- 180

  Fly   264 PYQSHPHHP--HPH------PHH------VQLAAATLSAKYGFGSPLELSLPRLPNAFPGLAHYP 314
               .:|.||  :.|      |.|      :|..:.|.|..|..||| ..|:.......||:|   
Mouse   181 ---GYPQHPGLNAHGAAQMQPMHRYDVSALQYNSMTSSQTYMNGSP-TYSMSYSQQGTPGMA--- 238

  Fly   315 LDPTLALDLQARLQAMYAGSIYHPWRYLPLISPETPPSPPSSSGTGISSYGCVKSEKSS------ 373
                        |.:|  ||:         :..|...|||..:.:..|...|...:...      
Mouse   239 ------------LGSM--GSV---------VKSEASSSPPVVTSSSHSRAPCQAGDLRDMISMYL 280

  Fly   374 PNAVVASAASPPNI 387
            |.|.|...|:|..:
Mouse   281 PGAEVPEPAAPSRL 294

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sox21aNP_001261827.1 HMG-box_SoxB 119..198 CDD:438790 71/78 (91%)
Sox2NP_035573.3 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..43 10/38 (26%)
HMG-box_SoxB 41..120 CDD:438790 71/78 (91%)
SOXp 112..202 CDD:463537 34/110 (31%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 247..267 5/19 (26%)
9aaTAD. /evidence=ECO:0000250|UniProtKB:P41225 274..282 0/7 (0%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 299..319
Blue background indicates that the domain is not in the aligned region.

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