DRSC/TRiP Functional Genomics Resources

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Protein Alignment Sox21a and Sox17

DIOPT Version :10

Sequence 1:NP_001261827.1 Gene:Sox21a / 39567 FlyBaseID:FBgn0036411 Length:407 Species:Drosophila melanogaster
Sequence 2:NP_035571.1 Gene:Sox17 / 20671 MGIID:107543 Length:419 Species:Mus musculus


Alignment Length:416 Identity:117/416 - (28%)
Similarity:165/416 - (39%) Gaps:95/416 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly    21 SGSSNHSHSSSLSPQLPGINLGLGMVGGLGMGMSVGVGSGSGNTTPPPMPPADLAVPPAAPTPVA 85
            :|.::...|...|.| |.:..|||                       |.|.|: ::.|.....|.
Mouse     6 AGYASDDQSQPRSAQ-PAVMAGLG-----------------------PCPWAE-SLSPLGDVKVK 45

  Fly    86 PKMHQHTHHHGNSHHNAPTSHSNSNTGSHHNSHDHIKRPMNAFMVWSRGQRRKMAQDNPKMHNSE 150
            .::             ..:|.:.:.|.....:...|:|||||||||::.:|:::||.||.:||:|
Mouse    46 GEV-------------VASSGAPAGTSGRAKAESRIRRPMNAFMVWAKDERKRLAQQNPDLHNAE 97

  Fly   151 ISKRLGAEWKLLTEGQKRPFIDEAKRLRALHMKEHPDYKYRPRRKPKTLNKSPVPGG-------G 208
            :||.||..||.||..:||||::||:|||..||::||:|||||||:.:......|.||       .
Mouse    98 LSKMLGKSWKALTLAEKRPFVEEAERLRVQHMQDHPNYKYRPRRRKQVKRMKRVEGGFLHALVEP 162

  Fly   209 GGGGGGGANGGVNAGGAGNSGPSGPGSVGSPKDMQPQLSP-----LGQSLPHLHGHPHQSP---- 264
            ..|..|...|.|...|.|...|. ||....|..|.|.:.|     .|...|.|.|:|..:|    
Mouse   163 QAGALGPEGGRVAMDGLGLPFPE-PGYPAGPPLMSPHMGPHYRDCQGLGAPALDGYPLPTPDTSP 226

  Fly   265 ----YQSHPHHPHPHPHHVQLAAATLS----AKYGF-----GSPLELSLPRLPNAFPGLAHYPLD 316
                .|.......|.|.... ||.|.:    :.|..     ..|:.:.......|.||:    |.
Mouse   227 LDGVEQDPAFFAAPLPGDCP-AAGTYTYAPVSDYAVSVEPPAGPMRVGPDPSGPAMPGI----LA 286

  Fly   317 PTLALDLQARLQ---AMYAGSIYHPWRYLPLISPETPPSPPSSSGTGISSYGCVKSEKSSPNAVV 378
            |..||.|.....   |..||..:|.....|| .|:.||.||               ::..|....
Mouse   287 PPSALHLYYGAMGSPAASAGRGFHAQPQQPL-QPQAPPPPP---------------QQQHPAHGP 335

  Fly   379 ASAASPPNIIXPTPLRFGAGTSSSAE 404
            ...:.||..:   |.|.|..::...|
Mouse   336 GQPSPPPEAL---PCRDGTESNQPTE 358

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sox21aNP_001261827.1 HMG-box_SoxB 119..198 CDD:438790 46/78 (59%)
Sox17NP_035571.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..27 5/21 (24%)
HMG-box_SoxF_SOX17 62..142 CDD:438850 45/79 (57%)
Sox17_18_mid 203..253 CDD:463454 12/50 (24%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 303..356 16/71 (23%)
9aaTAD. /evidence=ECO:0000250|UniProtKB:Q9H6I2 366..374
Blue background indicates that the domain is not in the aligned region.

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