DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Sox21a and gei-3

DIOPT Version :10

Sequence 1:NP_001261827.1 Gene:Sox21a / 39567 FlyBaseID:FBgn0036411 Length:407 Species:Drosophila melanogaster
Sequence 2:NP_001076772.1 Gene:gei-3 / 184597 WormBaseID:WBGene00001560 Length:1405 Species:Caenorhabditis elegans


Alignment Length:521 Identity:111/521 - (21%)
Similarity:168/521 - (32%) Gaps:176/521 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly    11 SHSHSNGYTSSGSSNHSHSSS--------------LSPQLPG-------INLGLGMVGGLGMGMS 54
            |.....|.||:||||.:.|||              ::|...|       .|.........|..||
 Worm   703 SSGGGGGLTSTGSSNPNGSSSNFQIHTTSRSGESNVTPTSGGDQNQNQQSNSRNSSAELAGCDMS 767

  Fly    55 VGVGSGSGNTTPPPMP--PADL--AVPPAAPTP-------------------VAPKMHQHTHHHG 96
            ..:...:.:..||.:|  |:.:  :|..|..:|                   |.|::.|......
 Worm   768 QELSVETSDAGPPTLPSQPSSIGSSVNSAFRSPVKIEPNDDYEQSSVKDVMDVKPEVFQSAKERR 832

  Fly    97 NSHHNAPTSHSNSNTGSHHNSHDHIKRPMNAFMVWSRGQRRKMAQDNPKMHNSEISKRLGAEWKL 161
            .|..:|              :..|::|||||||::|:..|..:.|..|...|..:||.||..|..
 Worm   833 RSKVSA--------------NEPHVRRPMNAFMIFSKRHRPLVHQQYPNKDNRTVSKILGEWWYS 883

  Fly   162 LTEGQKRPFIDEAKRLRALHMKEHPDYKYRPRR---KPKTLNKSPV------------------- 204
            |...||..:...|.:::..|.|.|||:|:..:.   |.::||.:||                   
 Worm   884 LAADQKAEYHKLATQVKEAHFKAHPDWKWSTKEKKIKSESLNTTPVALTPLKNKVFDFDIRTSDD 948

  Fly   205 -------------------PGGGGGGGGGGANGGVNAGGAGNSGPSGPGSVGSPKDMQPQLSPLG 250
                               |       |..|...:::..:..|..|.....|.|. |.|.||.:.
 Worm   949 LAKSFVDGTALLSPMTPMTP-------GASAFRHLSSRDSTQSSTSSFDFPGLPL-MSPSLSAIS 1005

  Fly   251 QSLPHLHGHP--------HQSPYQSHPH-----HPHPHPHHVQLAAATLSAKYGFGSPLELSLPR 302
            .:...:...|        .|..::|...     :|..:|       |.:|......:|....||.
 Worm  1006 MNTASITSSPALSSATPSFQFDFESLKQGTAGVYPTFNP-------AMISTLVNSSTPCRQILPM 1063

  Fly   303 ---------LPNAFPGLAHYPLDPTLA-------------LDLQARLQAMYAGSIYHPWRYLPLI 345
                     ||.|   .|...|:||::             ..|.|....|.|         :.:.
 Worm  1064 YNTDISSFFLPTA---SAFRVLNPTISSIIGGFSSADTVTTPLGAPATTMAA---------MKMS 1116

  Fly   346 SPETPPSPP--SSSGTGISSYGCVKSEKS-----SPNAV------VASAASPPN--IIXPTPLRF 395
            .|||....|  ......:|....:|.|..     |||.|      .|...:|..  :: |||.:.
 Worm  1117 FPETASMLPQLQEKLESVSFLDQIKIEPGETPLPSPNVVRPTIIPTAQFLAPTQQFVLQPTPAQL 1181

  Fly   396 G 396
            |
 Worm  1182 G 1182

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sox21aNP_001261827.1 HMG-box_SoxB 119..198 CDD:438790 29/81 (36%)
gei-3NP_001076772.1 DUF4819 194..275 CDD:465014
HMG-box_CIC-like 842..918 CDD:438806 28/75 (37%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.