DRSC/TRiP Functional Genomics Resources

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Protein Alignment Sox21a and Sox5

DIOPT Version :10

Sequence 1:NP_001261827.1 Gene:Sox21a / 39567 FlyBaseID:FBgn0036411 Length:407 Species:Drosophila melanogaster
Sequence 2:XP_006237666.1 Gene:Sox5 / 140587 RGDID:620471 Length:764 Species:Rattus norvegicus


Alignment Length:102 Identity:48/102 - (47%)
Similarity:68/102 - (66%) Gaps:2/102 - (1%)


- Green bases have known domain annotations that are detailed below.


  Fly    96 GNSHHNAPTSHSN--SNTGSHHNSHDHIKRPMNAFMVWSRGQRRKMAQDNPKMHNSEISKRLGAE 158
            |:|..:|..|.|.  ..:....::..||||||||||||::.:|||:.|..|.||||.|||.||:.
  Rat   530 GDSDGSAGVSESRIYRESRGRGSNEPHIKRPMNAFMVWAKDERRKILQAFPDMHNSNISKILGSR 594

  Fly   159 WKLLTEGQKRPFIDEAKRLRALHMKEHPDYKYRPRRK 195
            ||.:|..:|:|:.:|..||...|::::|||||:||.|
  Rat   595 WKAMTNLEKQPYYEEQARLSKQHLEKYPDYKYKPRPK 631

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sox21aNP_001261827.1 HMG-box_SoxB 119..198 CDD:438790 43/77 (56%)
Sox5XP_006237666.1 HMG-box_EGL13-like 555..632 CDD:438848 43/77 (56%)

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