DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Sox21a and Sox9

DIOPT Version :10

Sequence 1:NP_001261827.1 Gene:Sox21a / 39567 FlyBaseID:FBgn0036411 Length:407 Species:Drosophila melanogaster
Sequence 2:NP_536328.1 Gene:Sox9 / 140586 RGDID:620474 Length:507 Species:Rattus norvegicus


Alignment Length:499 Identity:124/499 - (24%)
Similarity:158/499 - (31%) Gaps:186/499 - (37%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MTSISALLHRSHSHSNGYTSSGSSNHSHSSSLSPQLPGINLGLGMVGGLGMGMSVGVGSGSGNTT 65
            |..:...:..:.....|.:.:.|...|..|:.|| .|.                 |.||.:.||.
  Rat     1 MNLLDPFMKMTDEQEKGLSGAPSPTMSEDSAGSP-CPS-----------------GSGSDTENTR 47

  Fly    66 PP----PMPPADL---------------AVPPA--------APTPVAPKMHQHTHHHGNSHHNAP 103
            |.    |....||               ||...        .|.||         ....|..|.|
  Rat    48 PQENTFPKGEPDLKKESEEDKFPVCIREAVSQVLKGYDWTLVPMPV---------RVNGSSKNKP 103

  Fly   104 TSHSNSNTGSHHNSHDHIKRPMNAFMVWSRGQRRKMAQDNPKMHNSEISKRLGAEWKLLTEGQKR 168
                            |:||||||||||::..|||:|...|.:||:|:||.||..|:||.|.:||
  Rat   104 ----------------HVKRPMNAFMVWAQAARRKLADQYPHLHNAELSKTLGKLWRLLNESEKR 152

  Fly   169 PFIDEAKRLRALHMKEHPDYKYRPRRKPKTLNKSPVPGGGGGGGGGGANGGVNAGGAGNSGPSGP 233
            ||::||:|||..|.|:||||||:|||:...                 .||...|..|.......|
  Rat   153 PFVEEAERLRVQHKKDHPDYKYQPRRRKSV-----------------KNGQAEAEEATEQTHISP 200

  Fly   234 GSVGSPKDMQPQLSPLGQSLPHLHGHPHQSPYQSHPHHPHPHPHHVQLAAATLSAKYGFGSPL-- 296
            .::..........|..|.|..|..|. |....|..|..|......||.....|..:   |.||  
  Rat   201 NAIFKALQADSPHSSSGMSEVHSPGE-HSGQSQGPPTPPTTPKTDVQAGKVDLKRE---GRPLAE 261

  Fly   297 ---------------ELS------------------LPRLPNAFPGLAHYPLDPTLALDLQARLQ 328
                           |||                  ||  ||..||:.            ....|
  Rat   262 GGRQPPIDFRDVDIGELSSDVISNIETFDVNEFDQYLP--PNGHPGVP------------ATHGQ 312

  Fly   329 AMYAGSIY-------------HPWR----------YLPLISPETPPSPPS--------------- 355
            ..|.|| |             |.|.          ..|..:|:.|.:||.               
  Rat   313 VSYTGS-YGISSTAPTPATAGHVWMSKQQAPPPPPQQPPQAPQAPQAPPQQQAPPQPQQAPQQQQ 376

  Fly   356 -------SSGTGISSYGCVKSEKSSPNAVVASAASPPNIIXPTP 392
                   ||..|.|....:|:|:.||:.........|..|..:|
  Rat   377 AHTLTTLSSEPGQSQRTHIKTEQLSPSHYSEQQQHSPQQISYSP 420

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sox21aNP_001261827.1 HMG-box_SoxB 119..198 CDD:438790 47/78 (60%)
Sox9NP_536328.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..67 17/83 (20%)
Sox_N 22..94 CDD:463586 20/98 (20%)
Dimerization (DIM). /evidence=ECO:0000250|UniProtKB:P48436 63..103 7/48 (15%)
PQA. /evidence=ECO:0000250|UniProtKB:P48436 63..103 7/48 (15%)
HMG-box_SoxE 104..178 CDD:438840 45/73 (62%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 160..250 30/107 (28%)
Transactivation domain (TAM). /evidence=ECO:0000250|UniProtKB:P48436 224..307 20/88 (23%)
9aaTAD 1. /evidence=ECO:0000250|UniProtKB:P48436 275..284 3/8 (38%)
9aaTAD 2. /evidence=ECO:0000250|UniProtKB:P48436 290..298 0/7 (0%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 335..429 17/86 (20%)
Transactivation domain (TAC). /evidence=ECO:0000250|UniProtKB:P48436 392..507 7/29 (24%)
9aaTAD 3. /evidence=ECO:0000250|UniProtKB:P48436 458..466
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 477..507
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.