DRSC/TRiP Functional Genomics Resources

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Protein Alignment Sox21a and HMG20A

DIOPT Version :10

Sequence 1:NP_001261827.1 Gene:Sox21a / 39567 FlyBaseID:FBgn0036411 Length:407 Species:Drosophila melanogaster
Sequence 2:NP_060670.1 Gene:HMG20A / 10363 HGNCID:5001 Length:347 Species:Homo sapiens


Alignment Length:88 Identity:24/88 - (27%)
Similarity:44/88 - (50%) Gaps:11/88 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly   122 KRPMNAFMVWSRGQRRKMAQDNPKMHNSEISKRLGAEWKLLTEGQKRPFIDEAKRLRALHMKEHP 186
            |.|:..::.:...:|.::....|::...||::.||.||..|...:|:.::|||.|.:..:|||..
Human   104 KSPLTGYVRFMNERREQLRAKRPEVPFPEITRMLGNEWSKLPPEEKQRYLDEADRDKERYMKELE 168

  Fly   187 DY-----------KYRPRRKPKT 198
            .|           |.:.|:|.|:
Human   169 QYQKTEAYKVFSRKTQDRQKGKS 191

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sox21aNP_001261827.1 HMG-box_SoxB 119..198 CDD:438790 23/86 (27%)
HMG20ANP_060670.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..113 2/8 (25%)
DUF5401 <59..313 CDD:375164 24/88 (27%)
HMG-box_HMG20A 83..186 CDD:438833 21/81 (26%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 179..211 4/13 (31%)

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