DRSC/TRiP Functional Genomics Resources

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Protein Alignment Sox21a and sox18

DIOPT Version :10

Sequence 1:NP_001261827.1 Gene:Sox21a / 39567 FlyBaseID:FBgn0036411 Length:407 Species:Drosophila melanogaster
Sequence 2:NP_001123409.1 Gene:sox18 / 100170185 XenbaseID:XB-GENE-483233 Length:362 Species:Xenopus tropicalis


Alignment Length:311 Identity:98/311 - (31%)
Similarity:139/311 - (44%) Gaps:76/311 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly    69 MPPADLAVPPAAPTPVAPKMHQHTHHHGNSHHNAPTSHSNSNTGSHHNS-------HDHIKRPMN 126
            :|||| .||..:|||.:|.              ||.|.:.|....:..|       ...|:||||
 Frog    24 VPPAD-TVPETSPTPSSPP--------------APDSPTPSPQPGYGYSPCEEKPGDPRIRRPMN 73

  Fly   127 AFMVWSRGQRRKMAQDNPKMHNSEISKRLGAEWKLLTEGQKRPFIDEAKRLRALHMKEHPDYKYR 191
            |||||::.:|:::||.||.:||:.:||.||..||.|:..:||||::||:|||..|:::||:||||
 Frog    74 AFMVWAKDERKRLAQQNPDLHNAVLSKMLGQSWKNLSSAEKRPFVEEAERLRVQHLQDHPNYKYR 138

  Fly   192 PRRKP-----KTLNKSPVPGGGGGGGGGGANGG-----VNAGGAGNSGPSG-PGSVGSPKDM--- 242
            ||||.     |.::.||:....|..|...||..     ...||:|:....| |....||.|:   
 Frog   139 PRRKKQAKKLKRVDPSPLLRNEGYRGQAMANLSHFRDLHPLGGSGDLESYGLPTPEMSPLDVVEP 203

  Fly   243 -QPQLSPLGQSLPHLHGHPHQSPYQSHPHHPHPHPHHVQLAAATLSAKYGFGSPL-ELSLP--RL 303
             :|...|     ||:.......|::::.|                ...:|....| |:|||  ..
 Frog   204 SEPAFFP-----PHMREEADPGPFRTYQH----------------GVDFGQEKTLREISLPYSSS 247

  Fly   304 PNAFPGLAHYPLDPTLALDLQARLQAMYAGSIYHPWRYLPLISPETPPSPP 354
            |:...|....|           ...|.|    |:|....|..:|....|||
 Frog   248 PSHMGGFLRTP-----------TASAFY----YNPHGGSPACTPLGQLSPP 283

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sox21aNP_001261827.1 HMG-box_SoxB 119..198 CDD:438790 44/83 (53%)
sox18NP_001123409.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..68 15/58 (26%)
HMG-box_SoxF_SOX18 65..144 CDD:438851 44/78 (56%)
Interaction with DNA. /evidence=ECO:0000250|UniProtKB:P43680 70..83 9/12 (75%)
Interaction with DNA. /evidence=ECO:0000250|UniProtKB:P43680 94..106 6/11 (55%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 129..159 13/29 (45%)
Important for transcriptional activation. /evidence=ECO:0000250|UniProtKB:P43680 149..209 16/59 (27%)
Sox17_18_mid 173..222 CDD:463454 12/53 (23%)
9aaTAD. /evidence=ECO:0000250|UniProtKB:P35713 307..315
Blue background indicates that the domain is not in the aligned region.

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