DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG8100 and Lsp1beta

DIOPT Version :10

Sequence 1:NP_648693.2 Gene:CG8100 / 39565 FlyBaseID:FBgn0036410 Length:648 Species:Drosophila melanogaster
Sequence 2:NP_476624.1 Gene:Lsp1beta / 33274 FlyBaseID:FBgn0002563 Length:789 Species:Drosophila melanogaster


Alignment Length:152 Identity:31/152 - (20%)
Similarity:54/152 - (35%) Gaps:43/152 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly    78 PITGKNLPS-----WPQTSGIKRQHSVEYWLMASLLN--------GGEDENEAIRVFDPDLADVF 129
            |:.|:.|.|     |..::....:|:::.:.:...|:        |.:|..:|    .|  ..|.
  Fly    83 PLVGRYLFSQLHFHWGLSALDGSEHTIDGYRLPLELHVIHFAERFGDQDTAQA----SP--GGVL 141

  Fly   130 YVPFFSSLSFNTHGKNMTDPDTE-FDRLLQVELMEFLENSK--------------YWNRSGGKDH 179
            .:.:|.:|..|.:  ...:|..| .:|:|..|....||...              ||..:.....
  Fly   142 CLVYFFNLKSNPN--RFVEPVVEALERILLPESYTKLEPFPLIDLFHAFTDEYFLYWGCTRNGPQ 204

  Fly   180 VIPM-------THPNAFRFLRQ 194
            |.|:       ..|..||.|:|
  Fly   205 VTPLLWLLSRTQEPLDFRQLKQ 226

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG8100NP_648693.2 Hemocyanin_N 41..163 CDD:461025 20/98 (20%)
Hemocyanin_C 446..>617 CDD:461026
Lsp1betaNP_476624.1 Hemocyanin_N 32..154 CDD:461025 15/76 (20%)
Hemocyanin_M 160..496 CDD:459787 15/67 (22%)
Hemocyanin_C 505..754 CDD:461026
Blue background indicates that the domain is not in the aligned region.

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