DRSC/TRiP Functional Genomics Resources

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Protein Alignment: DCTN1-p150 and Clip3

Sequence 1:NP_524061.1 Gene:DCTN1-p150 FlyBaseID:FBgn0001108 Length:1265 Species:Drosophila melanogaster
Sequence 2:NP_001074583.1 Gene:Clip3 MGIID:1923936 Length:547 Species:Mus musculus

Alignment Length:153 Identity:48/154 (31%)
Similarity:78/154 (51%) Gaps:19/154 (12%)


  Fly     1 MSEKNLKVGARVELTGKDLLGTVAYVGMTSFAVGKWVGVVLDEPKGKNSGSIKGQQYFQCDENCG 65
            :|...|::|.||.|.|:. .||:.:.|.|.||.|:||||.||||:|||.||:.|.:||.|....|
Mouse   289 LSALGLRLGDRVLLDGQK-TGTLRFCGTTEFASGQWVGVELDEPEGKNDGSVGGVRYFICPPKQG 352

  Fly    66 MFVRPTQL-RLLEAAPGSRRSIEDVSGATPTAAQPTKARLSSSRTSLSSSRQSLLGSRTQLTT-- 127
            :|...::: :.::|.|.|            ..:.|...|:..||.: ...|:...|.:...::  
Mouse   353 LFASVSKVSKAVDAPPSS------------VTSTPRTPRMDFSRVT-GKGRREHKGKKKSPSSPS 404

  Fly   128 --SLSERTASSSSIGPRKSLAPQ 148
              ||.:|..:.:.:|.:..:|.|
Mouse   405 LGSLQQREGAKAEVGDQVLVAGQ 427

Known Domains:


GeneSequenceDomainRegion External IDIdentity
DCTN1-p150NP_524061.1 CAP_GLY 8..74 CDD:214997 31/67 (46%)
Dynactin 553..834 CDD:289240
Clip3NP_001074583.1 ANK 112..234 CDD:238125
ANK 1 117..158
ANK repeat 120..157 CDD:293786
ANK repeat 159..190 CDD:293786
ANK 2 160..191
ANK 3 197..229
ANK repeat 198..228 CDD:293786
CAP_GLY 296..360 CDD:307465 31/65 (48%)
CAP_GLY 418..482 CDD:307465 3/11 (27%)
GoLD 488..547
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
eggNOG 1 0.900 E1_COG5244
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 1 1.030 avgDist Average_Evolutionary_Distance R1398
TreeFam 00.000 Not matched by this tool.
21.930

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