Protein Alignment trn and sym-1

DIOPT Version :10

• Sequence 1: NP_001261796.1
• Gene: trn / 39491
• FlyBaseID: FBgn0010452
• Length: 751
• Species: Drosophila melanogaster
• Sequence 2: NP_510426.1
• Gene: sym-1 / 181555
• WormBaseID: WBGene00006366
• Length: 680
• Species: Caenorhabditis elegans
• Alignment Length: 397
• Identity: 103/397 - (25%)
• Similarity: 181/397 - (45%)
• Gaps: 28/397 - (7%)

  Fly    14 CILASIGVEPAAGLANCP------PGCQCDDNT--LVVQC----GEGQLDVLPIALNPSIQRLVI 66
            |:  ::.|.||. ||.||      ..|.||...  .|::|    |...::.|.......::.|.:
 Worm     6 CV--ALLVLPAC-LAFCPKLFQNQTACSCDSTVEGPVIKCSGHDGLRMVEKLSTTTTMEVRELAL 67

  Fly    67 KSNKIKTIDSSIQFYAELTFLDLSSNHLMTIPQRTF-AYQKKLQEVHLNHNKIGQISNKTFIGLS 130
            ::..|..:.........:..|.||:|.:..|....| ..:..:||:.|:.|.:.::......||.
 Worm    68 ENADIIEVGPKAFKTLRIKKLILSNNRIEKIHDHAFTGLENVMQELSLSENNLKEVPTSALAGLR 132

  Fly   131 AVTVLNLRGNQISELHQGTFTPLLKIEELNLGENRIGYLDPKAFDGLS-QLRILYLDDNALTTVP 194
            .:.:|:|:.|:|..:....|..:..:.::|||.|:|..:....|..:. .|:.|.||:|.:|..|
 Worm   133 VLNILSLKCNKIENITTKAFVNMTSLIDVNLGCNQICSMAADTFANVKMSLQNLILDNNCMTEFP 197

  Fly   195 DPVIFQAMPSLAELFLGMNTLQSIQADAFQDLKGLTRLELKGASLRNISHDSFLGLQELRILDLS 259
            ...: :.|.:|..|.:..|.:.:|:.:.|.:|..|:.|.|.|.::..|...:......|..|.|:
 Worm   198 SKAV-RNMNNLIALHIKYNKINAIRQNDFVNLTSLSMLSLNGNNISEIKGGALQNTPNLHYLYLN 261

  Fly   260 DNRLDRIPSVGLSKLVRLEQLSLGQNDFEVISEGAFMGLKQLKRLEVNGALRLKRVMTGAFSDNG 324
            :|.|..:.:..|.:..:|:.|.|..|:|..|::..|.||:.::.|.:: :.|:..|..|||:  |
 Worm   262 ENNLQTLDNGVLEQFKQLQVLDLSFNNFTDITKEMFEGLESIQHLNLD-SNRISAVAPGAFA--G 323

  Fly   325 NLEYLNLSSNKMLLEVQEGALSGLSQLKHVVLKANALTSLAEGLFP-WKDLQTLDLSENPLSCDC 388
            ....|....|..|.||.:..|.|...|:.|.|..|.:..:.|..|. ..:|.||||:.|
 Worm   324 TPLLLLWLPNNCLTEVSQQTLKGAPFLRMVSLSNNNIREVHELSFDHLPNLHTLDLANN------ 382

  Fly   389 RVMWLHN 395
            ::|.|.|
 Worm   383 KIMSLQN 389

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
trn	NP_001261796.1	leucine-rich repeat	62..80	CDD:275380	2/17 (12%)
		LRR	82..406	CDD:443914	86/317 (27%)
		leucine-rich repeat	84..107	CDD:275380	6/23 (26%)
		leucine-rich repeat	108..131	CDD:275380	6/22 (27%)
		leucine-rich repeat	132..155	CDD:275380	5/22 (23%)
		leucine-rich repeat	156..179	CDD:275380	6/23 (26%)
		leucine-rich repeat	180..204	CDD:275380	8/23 (35%)
		leucine-rich repeat	205..228	CDD:275380	6/22 (27%)
		leucine-rich repeat	229..252	CDD:275380	5/22 (23%)
		leucine-rich repeat	253..276	CDD:275380	6/22 (27%)
		leucine-rich repeat	277..300	CDD:275380	9/22 (41%)
		leucine-rich repeat	301..322	CDD:275380	6/20 (30%)
		leucine-rich repeat	326..350	CDD:275380	7/23 (30%)
		leucine-rich repeat	351..373	CDD:275380	6/22 (27%)
		LRRCT	382..434	CDD:214507	4/14 (29%)
sym-1	NP_510426.1	leucine-rich repeat	62..81	CDD:275380	2/18 (11%)
		LRR	<84..408	CDD:443914	86/316 (27%)
		leucine-rich repeat	86..108	CDD:275380	6/21 (29%)
		leucine-rich repeat	110..133	CDD:275380	6/22 (27%)
		leucine-rich repeat	134..157	CDD:275380	5/22 (23%)
		leucine-rich repeat	158..182	CDD:275380	6/23 (26%)
		leucine-rich repeat	183..206	CDD:275380	8/23 (35%)
		leucine-rich repeat	207..230	CDD:275380	6/22 (27%)
		leucine-rich repeat	231..254	CDD:275380	5/22 (23%)
		leucine-rich repeat	255..278	CDD:275380	6/22 (27%)
		leucine-rich repeat	279..302	CDD:275380	9/22 (41%)
		leucine-rich repeat	303..323	CDD:275380	6/22 (27%)
		leucine-rich repeat	350..373	CDD:275380	6/22 (27%)
		leucine-rich repeat	374..394	CDD:275380	9/22 (41%)
		leucine-rich repeat	399..410	CDD:275378