DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment sti and LAMA2

DIOPT Version :9

Sequence 1:NP_001261768.1 Gene:sti / 39429 FlyBaseID:FBgn0002466 Length:1858 Species:Drosophila melanogaster
Sequence 2:XP_016866340.1 Gene:LAMA2 / 3908 HGNCID:6482 Length:3212 Species:Homo sapiens


Alignment Length:1198 Identity:245/1198 - (20%)
Similarity:414/1198 - (34%) Gaps:411/1198 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly   736 ENETQEVRAECHRL------ERELQLAECRCQLAESSLATQVSPYETAPGSLTELNAIEDQLRAD 794
            ||.|||::   |.|      ||.:||||                                     
Human  1703 ENMTQELK---HLLSPQRAPERLIQLAE------------------------------------- 1727

  Fly   795 LLAAKESENHQKGRADQLQTLVTKLEQMLERFNEQSLSPTKSHSSRKQEGETVGDMLERQNEKLE 859
                           ..|.||||::.::|.|..:.:           .:||..|...||.|.:.:
Human  1728 ---------------GNLNTLVTEMNELLTRATKVT-----------ADGEQTGQDAERTNTRAK 1766

  Fly   860 DKLAAVREQMIVERQAARTANLSLWKVEKQLEEALSEKKLLARRMELTEDRIKKVQNASDEAQRM 924
            .....::|       .||.|       |...|:|:...:.|..|.|..|..::.:|...|:..:.
Human  1767 SLGEFIKE-------LARDA-------EAVNEKAIKLNETLGTRDEAFERNLEGLQKEIDQMIKE 1817

  Fly   925 LKTSQEETRQRESRIEELKQELAAAKRDVLKEHRQWEKAEQERMKCKSEIIEHLANVHRLEQQET 989
            |:....||::     |..:.||.||:..:.|..:.:.::..|.                 |:.|.
Human  1818 LRRKNLETQK-----EIAEDELVAAEALLKKVKKLFGESRGEN-----------------EEMEK 1860

  Fly   990 ELRQKLRQIQSRFDGVTLEQKNTIRELQEEREKSRKANDSCLVLQKELKQLTDNFQRLKYACSIT 1054
            :||:||...:::.|       :....|:|..:|.|:||....|.||.:                 
Human  1861 DLREKLADYKNKVD-------DAWDLLREATDKIREANRLFAVNQKNM----------------- 1901

  Fly  1055 DSQLTEVETMLKSEQERNKSQKSQLD-TLHEK---LRERNDQLTDLRKQLTTVESEKRLAEQRAQ 1115
                    |.|:.::|..:|.|.|:: ||.|.   |.|.|....::...:..||..:......::
Human  1902 --------TALEKKKEAVESGKRQIENTLKEGNDILDEANRLADEINSIIDYVEDIQTKLPPMSE 1958

  Fly  1116 VLASEIDELRLNLKEQQ-KKLVAQQDQLVEQTNALFATQERAELLDG-----QNANYEAQTA--- 1171
            .|..:||:|...:|::: .:.|:|.:....|.|      :.:.:|||     :|.::.|..|   
Human  1959 ELNDKIDDLSQEIKDRKLAEKVSQAESHAAQLN------DSSAVLDGILDEAKNISFNATAAFKA 2017

  Fly  1172 -DSNREMVSLKEENARILSELFHKKEEVGNLQAEIRGL--ESAQANLHAEIDSLQDTLAEKEQFY 1233
             .:.::.:...|:.|:...:|.|   |...|....|||  |.|:..|......|.:  |:|    
Human  2018 YSNIKDYIDEAEKVAKEAKDLAH---EATKLATGPRGLLKEDAKGCLQKSFRILNE--AKK---- 2073

  Fly  1234 VQRDIKSNATLAQHKKLIDYLQLKVEDLSAKK---KKTLADKLFGSSHTNKENVSPNDVESSILY 1295
            :..|:|.|   ..|   ::.|:.::|:..|:.   .:||.|.|      .|.:..|||..:.:  
Human  2074 LANDVKEN---EDH---LNGLKTRIENADARNGDLLRTLNDTL------GKLSAIPNDTAAKL-- 2124

  Fly  1296 RALKEELKREQKMNSLLKEQLAQ-------LNG---------------TATLRSPRKSAAVNGDS 1338
            :|:|:   :.::.|...|:.|||       |:|               .|.::.|.|:..: .|:
Human  2125 QAVKD---KARQANDTAKDVLAQITELHQNLDGLKKNYNKLADSVAKTNAVVKDPSKNKII-ADA 2185

  Fly  1339 DA-------------PKQRPVSIAALPRSPQKQQQPLKRTTSQV-ELKTTAEKPT---KVTIEN- 1385
            ||             .|.:|:         ::.:..||:..|:: ||...|.|..   ||::.: 
Human  2186 DATVKNLEQEADRLIDKLKPI---------KELEDNLKKNISEIKELINQARKQANSIKVSVSSG 2241

  Fly  1386 -QAHHRFELALQESKVDAVNCVVCEKAVVAGSPFWKCKECKDVTHRKCRSNVQSHCGSTKPTAPS 1449
             .....::..:::...:  |.||..|..||                   .|:..:.||.|     
Human  2242 GDCIRTYKPEIKKGSYN--NIVVNVKTAVA-------------------DNLLFYLGSAK----- 2280

  Fly  1450 ADDLSSIQ----SVSSLTLDSVDVAGGT--------TSGGEYIGSLVYSSDG--------AEDQA 1494
            ..|..:|:    .||.|.    ||..|.        |....|...:|.|..|        |.|..
Human  2281 FIDFLAIEMRKGKVSFLW----DVGSGVGRVEYPDLTIDDSYWYRIVASRTGRNGTISVRALDGP 2341

  Fly  1495 RKEIEVNCAFEVAEQQILLLGCNTGLYAYHLDSQRLVHISGLESVSCMSICKRLAKAIMV----- 1554
            :..|..:.....:.....:|         .:|:..::.:.||..        :|.||..|     
Human  2342 KASIVPSTHHSTSPPGYTIL---------DVDANAMLFVGGLTG--------KLKKADAVRVITF 2389

  Fly  1555 -GTVGEKLYQ------CDYRQLESRCQSSSSCHKPVLETS------------AIELP-------- 1592
             |.:||..:.      .::|:.|..|:..:.  .|.:|.|            .:..|        
Human  2390 TGCMGETYFDNKPIGLWNFREKEGDCKGCTV--SPQVEDSEGTIQFDGEGYALVSRPIRWYPNIS 2452

  Fly  1593 ---FANRTPSEKWKLVLISDEAENALDSVAIAATSTRIVILKYDL----------------KLHM 1638
               |..||.|....|:.::  ..:..|.:::..|...|.: .|||                |...
Human  2453 TVMFKFRTFSSSALLMYLA--TRDLRDFMSVELTDGHIKV-SYDLGSGMASVVSNQNHNDGKWKS 2514

  Fly  1639 FKPVRALDTAT-PVTSIFFTRHSAIVSSDKFYEIDLDNYAAEEFV-----DLSDKSMESTAKCQP 1697
            |...|....|. .:..|...:...|.:|.......||..|.::..     .|.:.||    |.:|
Human  2515 FTLSRIQKQANISIVDIDTNQEENIATSSSGNNFGLDLKADDKIYFGGLPTLRNLSM----KARP 2575

  Fly  1698 ----------LTAVRISRQEY-LLCFAEY-GVFVDEFGCRSRPYDLNWVYAPT----GFVYRDPF 1746
                      |..:.|||..| :|...:| ||   ..||     .|..||..:    |||...| 
Human  2576 EVNLKKYSGCLKDIEISRTPYNILSSPDYVGV---TKGC-----SLENVYTVSFPKPGFVELSP- 2631

  Fly  1747 LFISHYQSVQI---VRLHRSFSKEMASG 1771
                    |.|   ..::.|||.:..||
Human  2632 --------VPIDVGTEINLSFSTKNESG 2651

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
stiNP_001261768.1 PKc_like 111..452 CDD:304357
S_TKc 113..383 CDD:214567
Smc 487..1222 CDD:224117 106/507 (21%)
CNH 1503..1774 CDD:279162 69/345 (20%)
LAMA2XP_016866340.1 None
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
10.910

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