DRSC/TRiP Functional Genomics Resources

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Protein Alignment Lmx1a and ro

DIOPT Version :10

Sequence 1:NP_729801.1 Gene:Lmx1a / 39406 FlyBaseID:FBgn0052105 Length:640 Species:Drosophila melanogaster
Sequence 2:NP_524521.1 Gene:ro / 43234 FlyBaseID:FBgn0003267 Length:350 Species:Drosophila melanogaster


Alignment Length:145 Identity:35/145 - (24%)
Similarity:63/145 - (43%) Gaps:38/145 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly   416 RPRDGRRGPKRPRTILTSQQRKQFKASFDQSPKPCRKVREALAKDTGLSVRVVQVWFQNQRAKMK 480
            |.::||:  :|.||..:::|..:.:..|.::....|..|..||:...|:...:::||||:|||.|
  Fly   185 RRKEGRQ--RRQRTTFSTEQTLRLEVEFHRNEYISRSRRFELAETLRLTETQIKIWFQNRRAKDK 247

  Fly   481 KIQR-KAKQN------------------------GGSGGGSGSGRGTGNSSA-----------TD 509
            :|:: :..|:                        ||..||...|.|....:|           |.
  Fly   248 RIEKAQIDQHYRNFVVANGFMSSIMGQAATTMPPGGVTGGVAVGVGLNYYAAAATPAALPKDNTQ 312

  Fly   510 DKDTNDKEDKCVKQE 524
            |.:..|.:|:..:|:
  Fly   313 DANFIDIDDQFQRQQ 327

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Lmx1aNP_729801.1 LIM1_Lmx1b 275..327 CDD:188757
LIM 333..388 CDD:413332
Homeodomain 425..481 CDD:459649 17/55 (31%)
roNP_524521.1 Homeodomain 196..248 CDD:459649 15/51 (29%)
Blue background indicates that the domain is not in the aligned region.

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